Research output per year
Research output per year
Description
This pipeline is part of the publication: Matthey-Doret et al., 2019, Genome Biology and evolution, doi: 10.1093/gbe/evz219
In this project, we use restriction-site associated DNA-sequencing (RAD-seq) and build a custom pipeline with the aim to locate and identify the complementary sex determination (CSD) locus/loci in the parasitoid wasp species Lysiphlebus fabarum. This repository contains a pipeline to map the reads using BWA and build loci using the different components of STACKS with optimal parameters and perform downstream analyses. It was designed to run on a distributed High Performance Computing (HPC) environment with LSF but can also be ran on a personal machine.
In this project, we use restriction-site associated DNA-sequencing (RAD-seq) and build a custom pipeline with the aim to locate and identify the complementary sex determination (CSD) locus/loci in the parasitoid wasp species Lysiphlebus fabarum. This repository contains a pipeline to map the reads using BWA and build loci using the different components of STACKS with optimal parameters and perform downstream analyses. It was designed to run on a distributed High Performance Computing (HPC) environment with LSF but can also be ran on a personal machine.
| Date made available | 7-Nov-2019 |
|---|---|
| Publisher | University of Groningen |
Research output
- 1 Article
-
Mapping of multiple complementary sex determination loci in a parasitoid wasp
Matthey-Doret, C., van der Kooi, C. J., Jeffries, D. L., Bast, J., Dennis, A. B., Vorburger, C. & Schwander, T., Oct-2019, In: Genome Biology and Evolution. 11, 10, p. 2954-2962 9 p.Research output: Contribution to journal › Article › Academic › peer-review
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