Dataset: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

  • Natacha Monge Gomes do Couto (Creator)
  • Leonard Schüle (Creator)
  • Erwin Raangs (Creator)
  • Miguel P Machado (Creator)
  • Catarina Marques de Sousa Mendes (Creator)
  • Tiago F Jesus (Creator)
  • Monika Fliss (Creator)
  • Sigrid Rosema (Creator)
  • Mário Ramirez (Creator)
  • João André Carriço (Creator)
  • Ingo B Autenrieth (Creator)
  • Alex Friedrich (Creator)
  • Silke Peter (Creator)
  • John Rossen (Creator)



Paired-trimmed-un-mapped reads (hg19) generated for each sample have been submitted to SRA under project number SRP126380
cgMLST and accessory ref-seq
Date made available10-May-2018
PublisherUniversity of Groningen

Keywords on Datasets

  • Health
  • Shotgun metagenomics
  • Microbiology
  • SMg
  • Escherichia coli
  • E-coli
  • Staphylococcus epidermidis
  • antimicrobial resistance

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