Groningen Biomolecular Sciences and Biotechnology Institute

Search results

• Additional file 1: of Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

  Price, C. (Contributor), Branco Dos Santos, F. (Contributor), Hesseling - Meinders, A. (Contributor), Uusitalo, J. (Contributor), Bachmann, H. (Contributor), Benavente, V. (Contributor), Goel, A. (Contributor), Berkhout, J. (Contributor), Bruggeman, F. J. (Contributor), Marrink, S.-J. (Contributor), Montalban Lopez, M. (Contributor), de Jong, A. (Contributor), Kok, J. (Contributor), Molenaar, D. (Contributor), Poolman, B. (Contributor), Teusink, B. (Contributor) & Kuipers, O. P. (Contributor), figshare, 10-Jan-2019

  DOI: 10.6084/m9.figshare.7576595

  Dataset

• Translocation of linearized full-length proteins through an engineered nanopore under opposing electrophoretic force

  Hatenboer-Sauciuc, A. (Contributor), Morozzo della Rocca, B. (Contributor), Tadema, M. (Contributor), Chinappi, M. (Contributor) & Maglia, G. (Contributor), ZENODO, 11-Sept-2023

  DOI: 10.5281/zenodo.8123395

  Dataset

• Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle

  Takhaveev, V. (Creator), Ozsezen, S. (Creator), Smith, E. (Creator), Zylstra, A. (Creator), Chaillet, M. (Creator), Chen, H. (Creator), Papagiannakis, A. (Creator), Milias-Argeitis, A. (Creator) & Heinemann, M. (Creator), DataverseNL, 7-Jan-2023

  DOI: 10.34894/xpyc7y

  Dataset

• Supplementary Dataset from Kinetoplastid kinetochore proteins KKT14-KKT15 are divergent Bub1/BubR1-Bub3 proteins

  Ballmer, D. (Creator), Carter, W. (Creator), van Hooff, J. J. E. (Creator), Tromer, E. C. (Creator), Ishii, M. (Creator), Ludzia, P. (Creator) & Akiyoshi, B. (Creator), figshare, 2-May-2024

  DOI: 10.6084/m9.figshare.25737662.v1

  Dataset

• Additional file 3: of Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus

  Ceniceros, A. (Creator), Dijkhuizen, L. (Creator), Petrusma, M. (Creator) & Medema, M. H. (Creator), figshare, 9-Aug-2017

  DOI: 10.6084/m9.figshare.c.3849541_d3, https://figshare.com/articles/Additional_file_3_of_Genome-based_exploration_of_the_specialized_metabolic_capacities_of_the_genus_Rhodococcus/5296999

  Dataset

• Dataset of the simulations in the GōMartini 3: From large conformational changes in proteins to environmental bias corrections

  Souza, P. C. T. (Contributor), Borges-Araújo, L. (Contributor), Brasnett, C. (Contributor), Moreira, R. A. (Contributor), Grünewald, F. (Contributor), Park, P. (Contributor), Wang, L. (Contributor), Razmazma, H. (Contributor), Borges-Araújo, A. C. (Contributor), Cofas-Vargas, L. F. (Contributor), Monticelli, L. (Contributor), Mera-Adasme, R. (Contributor), Melo, M. N. (Contributor), Wu, S. (Contributor), Marrink, S. J. (Contributor), Poma, A. B. (Contributor) & Thallmair, S. (Contributor), ZENODO, 10-Aug-2024

  DOI: 10.5281/zenodo.11198318

  Dataset

• Additional file 4: of Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus

  Ceniceros, A. (Contributor), Dijkhuizen, L. (Contributor), Petrusma, M. (Contributor) & Medema, M. (Contributor), figshare, 9-Aug-2017

  DOI: 10.6084/m9.figshare.c.3849541_d4

  Dataset

• Biometric Recognition of African Clawed Frogs

  Prins, F. L. (Creator), Tomanin, D. (Creator), Kamenz, J. (Creator) & Azzopardi, G. (Creator), DataverseNL, 11-Jul-2023

  DOI: 10.34894/pypnu6

  Dataset

• Exoproteomic profiling uncovers critical determinants for virulence of livestock-associated and human-originated Staphylococcus aureus ST398 strains

  Zhao, X. (Contributor), Fliss, M. (Contributor), Wang, M. (Contributor), Vera Murguia, E. (Contributor), de Jong, A. (Contributor), Becher, D. (Contributor), Maaß, S. (Contributor), Buist, G. (Contributor) & van Dijl, J. M. (Contributor), University of Groningen, 24-Aug-2020

  DOI: 10.6084/m9.figshare.12852048.v1

  Dataset

• Additional file 9 of Hmga2 protein loss alters nuclear envelope and 3D chromatin structure

  Divisato, G. (Contributor), Chiariello, A. M. (Contributor), Esposito, A. (Contributor), Zoppoli, P. (Contributor), Zambelli, F. (Contributor), Elia, M. A. (Contributor), Pesole, G. (Contributor), Incarnato, D. (Contributor), Passaro, F. (Contributor), Piscitelli, S. (Contributor), Oliviero, S. (Contributor), Nicodemi, M. (Contributor), Parisi, S. (Contributor) & Russo, T. (Contributor), Springer, 3-Aug-2022

  DOI: 10.6084/m9.figshare.20423960.v1

  Dataset

• Additional file of Genome-wide inference of regulatory networks in Streptomyces coelicolor

  Castro-Melchor, M. (Contributor), Charaniya, S. (Contributor), Karypis, G. (Contributor), Takano, E. (Contributor) & Hu, W.-S. (Contributor), figshare, 16-Apr-2021

  DOI: 10.6084/m9.figshare.14436548

  Dataset

• An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae

  Nepal, S. (Contributor), Bonn, F. (Creator), Grasso, S. (Creator), Stobernack, T. (Contributor), de Jong, A. (Contributor), Zhou, K. (Contributor), Wedema, R. (Contributor), Rosema, S. (Contributor), Becher, D. (Creator), Otto, A. (Creator), Rossen, J. (Contributor), Van Dijl, J. M. (Contributor) & Bathoorn, E. (Contributor), Taylor & Francis Group, 13-Aug-2018

  DOI: 10.6084/m9.figshare.6960083, https://tandf.figshare.com/articles/An_ancient_family_of_mobile_genomic_islands_introducing_cephalosporinase_and_carbapenemase_genes_in_i_Enterobacteriaceae_i_/6960083

  Dataset

• Peer-reviewed dataset: The quantitative and condition-dependent Escherichia coli proteome

  Schmidt, A. (Creator), Kochanowski, K. (Creator), Vedelaar, S. R. (Creator), Ahrne, E. (Creator), Volkmer, B. (Creator), Callipo, L. (Creator), Knoops, K. (Creator), Bauer, M. (Creator), Aebersold, R. (Creator) & Heinemann, M. (Creator), European Bioinformatics Institute (EMBL-EBI), 8-Dec-2015

  DOI: 10.6019/PXD000498, https://www.ebi.ac.uk/pride/archive/projects/PXD000498

  Dataset

• CCDC 605888: Experimental Crystal Structure Determination

  Haak, R. (Contributor), Tarabiono, C. (Contributor), Janssen, D. B. (Contributor), Minnaard, A. (Contributor), De Vries, J. G. (Contributor) & Feringa, B. L. (Contributor), University of Groningen, 27-Apr-2006

  DOI: 10.5517/ccnbgs6

  Dataset

• Additional file 1: of FitTetra 2.0 â improved genotype calling for tetraploids with multiple population and parental data support

  Zych, K. (Contributor), Gort, G. (Contributor), Maliepaard, C. A. (Contributor), Jansen, R. C. (Contributor) & Voorrips, R. E. (Contributor), figshare, 20-Mar-2019

  DOI: 10.6084/m9.figshare.7872899

  Dataset

• pirouette_examples

  Bilderbeek, R. (Contributor), Laudanno, G. (Contributor) & Etienne, R. (Contributor), ZENODO, 2-Aug-2020

  DOI: 10.5281/zenodo.3970000

  Dataset

• Additional file 2 of Genome-wide inference of regulatory networks in Streptomyces coelicolor

  Castro-Melchor, M. (Contributor), Charaniya, S. (Contributor), Karypis, G. (Contributor), Takano, E. (Contributor) & Hu, W.-S. (Contributor), University of Groningen, 16-Apr-2021

  DOI: 10.6084/m9.figshare.14436575

  Dataset

• Trajectories of simulated lipid membranes interacting with antimicrobial peptidomimetic AMC-109 and simulation setup files

  Melcr, J. (Contributor), ZENODO, 1-Jun-2023

  DOI: 10.5281/zenodo.7990762

  Dataset

• Molecular dynamics simulation of tricaproin in gas phase using machine-learning potential ANI2x

  Melcr, J. (Contributor), ZENODO, 2-Jul-2021

  DOI: 10.5281/zenodo.5060102

  Dataset

• ncbi_peregrine

  Bilderbeek, R. (Contributor), ZENODO, 29-Dec-2021

  DOI: 10.5281/zenodo.5809128

  Dataset

• Data for publication "Molecular Insights into the Dynamics of Amyloid Fibril Growth: Elongation and Lateral Assembly of GNNQQNY Protofibrils"

  John, T. (Creator), Rampioni, A. (Creator), Poger, D. (Creator) & Mark, A. (Creator), ZENODO, 9-Jan-2024

  DOI: 10.5281/zenodo.10470962

  Dataset

• CCDC 780571: Experimental Crystal Structure Determination

  Voskuhl, J. (Contributor), Fenske, T. (Contributor), Stuart, M. (Contributor), Wibbeling, B. (Contributor), Schmuck, C. (Contributor) & Ravoo, B. J. (Contributor), University of Groningen, 11-Jun-2010

  DOI: 10.5517/ccv67qz

  Dataset

• Additional file 4: Figure S1. of Quantitative modeling and analytic assessment of the transcription dynamics of the XlnR regulon in Aspergillus niger

  Omony, J. (Contributor), Mach-Aigner, A. R. (Contributor), van Straten, G. (Contributor) & van Boxtel, A. J. B. (Contributor), University of Groningen, 29-Jan-2016

  DOI: 10.6084/m9.figshare.c.3598823_d5.v1

  Dataset

• CCDC 1452254: Experimental Crystal Structure Determination

  Wezenberg, S. (Contributor), Croisetu, C. M. (Contributor), Stuart, M. (Contributor) & Feringa, B. L. (Contributor), University of Groningen, 8-Feb-2016

  DOI: 10.5517/ccdc.csd.cc1kr5xd

  Dataset

• The Arabidopsis Leaf Quantitative Atlas: a cellular and subcellular mapping through unified data integration

  Tolleter, D. (Creator), Smith, E. N. (Creator), Dupont-Thibert, C. (Creator), Uwizeye, C. (Creator), Vile, D. (Creator), Gloaguen, P. (Creator), Falconet, D. (Creator), Finazzi, G. (Creator), Vandenbrouck, Y. (Creator) & Curien, G. (Creator), ZENODO, 20-Dec-2023

  DOI: 10.5281/zenodo.10410541

  Dataset