Organisation profile
We strive to unravel the mechanism underlying the immense diversity of life. How do organisms adapt, differentiate and diversify? How do they shape and are shaped by the communities and ecosystems they occur in?
To do so, we study a wide array of organisms and systems – from exotic viruses to their unicellular eukaryotic hosts, from endophytic fungi to carnivorous plants, and from open-ocean cyanobacteria to coastal soil microbiomes. Our focus lies in understanding processes that drive and accelerate evolution in these systems, such as horizontal gene transfer via mobile genetic elements, viruses or vesicles.
For our research, we harness the power of genomics and big data, leveraging cutting-edge sequencing technologies and devising workflows and software to maximize their use. Moreover, we are developing tools for data exploration, integration and interpretation with a focus on genomics data visualization.
Combining these efforts, we aim to gain new insights into the concert of ecology and evolution that brings forth the wondrous living world around us.
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Collaborations and top research areas from the last five years
Profiles
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Thomas Hackl, PhD
- Faculty of Science and Engineering, Hackl lab - Eco-Evolutionary Bioinformatics - Assistant Professor
Person: Scientific Staff
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Nanyang Li
- Faculty of Science and Engineering, De Vos lab - Microbial Eco-Evolutionary Medicine - PhD student
- Faculty of Science and Engineering, Hackl lab - Eco-Evolutionary Bioinformatics - PhD student
- Faculty of Science and Engineering, Etienne group - Theoretical and Evolutionary Community Ecology - PhD student
Person: Scientific Staff
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Tomas Vogels, MSc
- Faculty of Science and Engineering, Hackl lab - Eco-Evolutionary Bioinformatics - PhD student
- Faculty of Science and Engineering, Falcao Salles lab - Microbial Community Ecology - PhD student
Person: Scientific Staff
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A discriminative primer design workflow enables selective metabarcoding, demonstrated using long-read sequencing of endophytic fungi
He, T., Jansonius, K., Li, X., Reilly, A. M., Sevgin, B., Setroikromo, R., Hackl, T. & Haslinger, K., Mar-2026, (E-pub ahead of print) In: FEMS microbiology ecology. 102, 3, 11 p., fiag014.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile -
A missing link in microbial ecology? Unpacking the soil mobilome over a century-long soil chronosequence
Mei, S., Jan-2026, [Groningen]: University of Groningen. 146 p.Research output: Thesis › Thesis fully internal (DIV)
Open AccessFile114 Downloads (Pure) -
aplot: Decorate a 'ggplot' with associated information
Yu, G. (Developer), Xu, S. (Developer) & Hackl, T. (Developer), 12-Sept-2025Research output: Non-textual form › Software › Academic
Open Access
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Joint Annual Meeting of the Integrative/Quantitative Microbial Ecology initiative (I/QME) and the Netherlands Association for Viral Ecology (NAVE)
Hackl, T. (Organiser), Lequime, S. (Organiser) & de Vos, M. (Organiser)
21-Mar-2024 → 22-Mar-2024Activity: Organising and attending an event › Organising and contributing to an event › Academic
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Transcriptional competition governs the coinfection dynamics in a protist-virus-virophage system
Hackl, T. (Speaker)
17-Oct-2024Activity: Talk and presentation › Academic presentation › Academic
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5th Ringberg Symposium on Giant Virus Biology
Hackl, T. (Session chair)
6-Dec-2023 → 9-Dec-2023Activity: Organising and attending an event › Organising and contributing to an event › Academic
File
Datasets
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Additional file 5 of Genome sequencing and molecular networking analysis of the wild fungus Anthostomella pinea reveal its ability to produce a diverse range of secondary metabolites
Iacovelli, R. (Creator), He, T. (Creator), Allen, J. L. (Creator), Hackl, T. (Creator) & Haslinger, K. (Creator), figshare, 14-Aug-2024
DOI: 10.6084/m9.figshare.26660071.v1
Dataset
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Additional file 2 of Genome sequencing and molecular networking analysis of the wild fungus Anthostomella pinea reveal its ability to produce a diverse range of secondary metabolites
Iacovelli, R. (Creator), He, T. (Creator), Allen, J. L. (Creator), Hackl, T. (Creator) & Haslinger, K. (Creator), figshare, 14-Aug-2024
DOI: 10.6084/m9.figshare.26660062.v1
Dataset
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Additional file 4 of Genome sequencing and molecular networking analysis of the wild fungus Anthostomella pinea reveal its ability to produce a diverse range of secondary metabolites
Iacovelli, R. (Creator), He, T. (Creator), Allen, J. L. (Creator), Hackl, T. (Creator) & Haslinger, K. (Creator), figshare, 14-Aug-2024
DOI: 10.6084/m9.figshare.26660068.v1
Dataset
Press/Media
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Genoom van de gewone strandkrab ontrafeld
Brons, J., Hackl, T., Iacovelli, R., Haslinger, K., Lequime, S. & van der Meij, S.
01/11/2025
1 item of Media coverage
Press/Media: Research › Popular
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Protection from an unexpected source
13/03/2024 → 15/03/2024
12 items of Media coverage
Press/Media: Research › Academic
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Uni Innsbruck entdeckt blinde Passagiere im Erbgut
11/04/2023
1 item of Media coverage
Press/Media: Research › Popular
Projects
- 1 Finished
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Teaching coding effectively through interactive formative assessments
van Benthem, K. (PI) & Hackl, T. (PI)
01/08/2023 → 31/12/2025
Project: Education
Prizes
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FunCTion – Fungal community typification and rational design to improve plant traits
Haslinger, K. (Recipient) & Hackl, T. (Recipient), 1-Oct-2025
Prize: Fellowship awarded competitively › Academic
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Open Research Award 2024
Brait, N. (Recipient), Lequime, S. (Recipient) & Hackl, T. (Recipient), 7-Nov-2024
Prize › Academic