Erik van der Giessen

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• 2023

  Extracellular proteoglycans: A multiscale computational study

  Shakibi, S., Onck, P. R., Van, E. & van der Giessen, E., 10-Feb-2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 420a-421a 2 p.

  Research output: Contribution to journal › Meeting Abstract › Academic
• 2022

  Dislocation Dynamics for Plasticity Boundary Value Problems

  van der Giessen, E. & Needleman, A., 2022, Encyclopedia of Materials: Metals and Alloys. Oxford: Elsevier, Vol. 4. p. 541-551 11 p.

  Research output: Chapter in Book/Report/Conference proceeding › Entry for encyclopedia/dictionary › Academic › peer-review
  2 Citations (Scopus)

• Molecular basis of C9orf72 poly-PR interference with the β-karyopherin family of nuclear transport receptors

  Jafarinia, H., Van der Giessen, E. & Onck, P. R., 9-Dec-2022, In: Scientific Reports. 12, 1, 11 p., 21324.

  Research output: Contribution to journal › Article › Academic › peer-review

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  1 Downloads (Pure)

• Transport receptor occupancy in nuclear pore complex mimics

  Fragasso, A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van der Giessen, E., Onck, P. R. & Dekker, C., Nov-2022, In: Nano Research. 15, 11, p. 9689–9703 15 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  4 Citations (Scopus)

  8 Downloads (Pure)
• 2021

  A 4BPA Coarse-Grained Molecular Dynamics Study on the Aggregation of Polyglutamine

  van der Klok, M., Dekker, M., Van der Giessen, E. & Onck, P. R., 12-Feb-2021, In: Biophysical Journal. 120, 3 Suppl. 1, p. 28A-28A 1 p.

  Research output: Contribution to journal › Meeting Abstract › Academic

• A designer FG-Nup that reconstitutes the selective transport barrier of the nuclear pore complex

  Fragasso, A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van der Giessen, E., Dahlin, A., Onck, P. R. & Dekker, C., 1-Dec-2021, In: Nature Communications. 12, 1, 15 p., 2010.

  Research output: Contribution to journal › Article › Academic › peer-review

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  16 Citations (Scopus)

  40 Downloads (Pure)

• Clearing-induced tissue shrinkage: A novel observation of a thickness size effect

  Vulders, R. C. M., van Hoogenhuizen, R. C., van der Giessen, E. & van der Zaag, P., 16-Dec-2021, In: PLoS ONE. 16, 12, 10 p., e0261417.

  Research output: Contribution to journal › Article › Academic › peer-review

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  4 Citations (Scopus)

  34 Downloads (Pure)

• De Novo Computational Design of Disordered Fg-Nucleoporins

  De Vries, H., Fragasso, A., Otto, T., Klughammer, N., Andersson, J., Sluis, E. V. D., Steen, A., Dahlin, A., Veenhoff, L., Dekker, C., Giessen, E. V. D. & Onck, P., 12-Feb-2021, In: Biophysical Journal. 120, 3, p. 29a-30a

  Research output: Contribution to journal › Meeting Abstract › Academic

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  46 Downloads (Pure)

• Effective mobility of BCC dislocations in two-dimensional discrete dislocation plasticity

  Katiyar, T. & Van der Giessen, E., 1-Feb-2021, In: Computational Materials Science. 187, 110129.

  Research output: Contribution to journal › Article › Academic › peer-review

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  2 Citations (Scopus)

  23 Downloads (Pure)

• The Interaction between Poly-PR Dipeptide Repeat Proteins and the Nuclear Pore Complex

  Jafarinia, H., Van der Giessen, E. & Onck, P. R., 12-Feb-2021, In: Biophysical Journal. 120, 3, p. 285A-285A 1 p.

  Research output: Contribution to journal › Meeting Abstract › Academic

• Unified scenario for the morphology of crack paths in two-dimensional disordered solids

  Ponson, L., Shabir, Z., Abdulmajid, M., Van Der Giessen, E. & Simone, A., Nov-2021, In: Physical Review E. 104, 5, 055003.

  Research output: Contribution to journal › Article › Academic › peer-review

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  2 Citations (Scopus)

  18 Downloads (Pure)
• 2020

  A Designer FG-Nup that Reconstitutes the Selective Transport Barrier of the Nuclear Pore Complex

  Fragasso, A., de Vries, H., van der Sluis, E., Van der Giessen, E., Onck, P. R. & Dekker, C., 7-Feb-2020, In: Biophysical Journal. 118, 3, p. 341A-342A 2 p.

  Research output: Contribution to journal › Meeting Abstract › Academic

• Coarse-Grained Modeling of Nuclear Pore Complex Mimics Comprising Designer FG-Nucleoporins

  de Vries, H., Fragasso, A., van der Sluis, E. O., Dekker, C., Van der Giessen, E. & Onck, P. R., 7-Feb-2020, In: Biophysical Journal. 118, 3, p. 342A-343A 2 p.

  Research output: Contribution to journal › Meeting Abstract › Academic

• Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD

  Jafarinia, H., van der Giessen, E. & Onck, P. R., 18-Aug-2020, In: Biophysical Journal. 119, 4, p. 843-851 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  12 Citations (Scopus)

  51 Downloads (Pure)

• Roadmap on multiscale materials modeling

  van der Giessen, E., Schultz, P., Bertin, N., Bulatov, V., Cai, W., Csanyi, G., Foiles, S., Geers, M., González, C., Hütter, M., Kim, W-K., Kochmann, D., Llorca, J., Mattsson, A., Rottler, J., Shluger, A., Sills, R., Steinbach, I., Strachan, A. & Tadmor, E., Jun-2020, In: Modelling and Simulation in Materials Science and Engineering. 28, 4, 61 p., 043001.

  Research output: Contribution to journal › Article › Academic › peer-review

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  81 Citations (Scopus)

  162 Downloads (Pure)
• 2019

  Age-dependent deterioration of nuclear pore assembly in mitotic cells decreases transport dynamics

  Rempel, I. L., Crane, M. M., Thaller, D. J., Mishra, A., Jansen, D. P. M., Janssens, G., Popken, P., Akşit, A., Kaeberlein, M., van der Giessen, E., Steen, A., Onck, P. R., Lusk, C. P. & Veenhoff, L. M., 3-Jun-2019, In: eLife. 8, 26 p., e48186.

  Research output: Contribution to journal › Article › Academic › peer-review

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  39 Citations (Scopus)

  252 Downloads (Pure)

• Discrete dislocation dynamics simulations of nanoindentation with pre-stress: Hardness and statistics of abrupt plastic events

  Song, H., Yavas, H., van der Giessen, E. & Papanikolaou, S., Feb-2019, In: Journal of the Mechanics and Physics of Solids. 123, p. 332-347 16 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  29 Citations (Scopus)

  85 Downloads (Pure)

• Micromechanics & emergence in time

  van der Giessen, E., May-2019, In: European Journal of Mechanics A-Solids. 75, p. 277-283 7 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  1 Citation (Scopus)

  138 Downloads (Pure)

• On the applicability of linear elastic fracture mechanics scaling relations in the analysis of intergranular fracture of brittle polycrystals

  Shabir, Z., van der Giessen, E., Duarte, A. & Simone, A., Dec-2019, In: Computational Mechanics. 220, 2, p. 205-219 15 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  5 Citations (Scopus)

  106 Downloads (Pure)

• The Effect of FG-Nup Phosphorylation on NPC Selectivity: A One-Bead-Per-Amino-Acid Molecular Dynamics Study

  Mishra, A., Sipma, W., Veenhoff, L. M., Van der Giessen, E. & Onck, P. R., 1-Feb-2019, In: International Journal of Molecular Sciences. 20, 3, 18 p., 596.

  Research output: Contribution to journal › Article › Academic › peer-review

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  8 Citations (Scopus)

  255 Downloads (Pure)
• 2018

  Artificial muscle-like function from hierarchical supramolecular assembly of photoresponsive molecular motors

  Chen, J., Leung, F. K-C., Stuart, M. C. A., Kajitani, T., Fukushima, T., van der Giessen, E. & Feringa, B. L., Feb-2018, In: Nature Chemistry. 10, 2, p. 132-138 7 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  258 Citations (Scopus)

  191 Downloads (Pure)

• Geometrically projected discrete dislocation dynamics

  Akhondzadeh, H., Sills, R., Papanikolaou, S., van der Giessen, E. & Cai, W., 20-Jul-2018, In: Modelling and Simulation in Materials Science and Engineering. 26, 6, 065011.

  Research output: Contribution to journal › Article › Academic › peer-review

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  6 Citations (Scopus)

  360 Downloads (Pure)

• Hemagglutinin-Mediated Membrane Fusion: A Biophysical Perspective

  Boonstra, S., Blijleven, J. S., Roos, W. H., Onck, P. R., van der Giessen, E. & van Oijen, A. M., May-2018, In: Annual Review of Biophysics. 47

  Research output: Contribution to journal › Review article › peer-review

  Open Access

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  40 Citations (Scopus)

  127 Downloads (Pure)

• Sol-gel transition in solutions of FG-Nups of the nuclear pore complex

  Ghavami, A., Van der Giessen, E. & Onck, P. R., Jul-2018, In: Extreme Mechanics Letters. 22, p. 36-41 6 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  11 Citations (Scopus)

  42 Downloads (Pure)

• Spatial structure of disordered proteins dictates conductance and selectivity in nuclear pore complex mimics

  Ananth, A. N., Mishra, A., Frey, S., Dwarkasing, A., Versloot, R., van der Giessen, E., Görlich, D., Onck, P. & Dekker, C., 14-Feb-2018, In: eLife. 7, 24 p., 31510.

  Research output: Contribution to journal › Article › Academic › peer-review

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  22 Citations (Scopus)

  267 Downloads (Pure)
• 2017

  Computation of Hemagglutinin Free Energy Difference by the Confinement Method

  Boonstra, S., Onck, P. R. & Van der Giessen, E., 20-Nov-2017, In: The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical. 121, 50, p. 11292-11303

  Research output: Contribution to journal › Article › Academic › peer-review

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  5 Citations (Scopus)

  266 Downloads (Pure)

• From Discrete Dislocation Plasticity to a Statistical Model of Rough Surface Contact

  Song, H., Vakis, A. I., Liu, X. & van der Giessen, E., 2017.

  Research output: Contribution to conference › Abstract › Academic

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  68 Downloads (Pure)

• Obstacles and sources in dislocation dynamics: Strengthening and statistics of abrupt plastic events in nanopillar compression

  Papanikolaou, S., Song, H. & van der Giessen, E., 14-Feb-2017, In: Journal of the Mechanics and Physics of Solids. 102, p. 17-29 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  37 Citations (Scopus)

  19 Downloads (Pure)

• Statistical model of rough surface contact accounting for size-dependent plasticity and asperity interaction

  Song, H., Vakis, A. I., Liu, X. & Van der Giessen, E., Sept-2017, In: Journal of the Mechanics and Physics of Solids. 106, p. 1-14 14 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  46 Citations (Scopus)

  55 Downloads (Pure)

• Strain rate effects on the plastic flow in submicron copper pillars: Considering the influence of sample size and dislocation nucleation

  Hu, J., Liu, Z., Van der Giessen, E. & Zhuang, Z., Nov-2017, In: Extreme Mechanics Letters. 17, p. 33-37 5 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  17 Citations (Scopus)

  30 Downloads (Pure)
• 2016

  CHARMM TIP3P Water Model Suppresses Peptide Folding by Solvating the Unfolded State

  Boonstra, S., Onck, P. R. & van der Giessen, E., 21-Apr-2016, In: The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical. 120, 15, p. 3692-3698 7 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  97 Citations (Scopus)

  26 Downloads (Pure)

• Continuum-micromechanical modeling of distributed crazing in rubber-toughened polymers

  Helbig, M., van der Giessen, E., Clausen, A. H. & Seelig, T., 2016, In: European Journal of Mechanics A-Solids. 57, p. 108-120 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  7 Citations (Scopus)

  9 Downloads (Pure)

• Discrete dislocation plasticity analysis of loading rate-dependent static friction

  Song, H., Deshpande, V. S. & van der Giessen, E., 1-Aug-2016, In: Proceedings of the Royal Society A, Mathematical Physical and Engineering Sciences. 472, 2192, 15 p., 20150877.

  Research output: Contribution to journal › Article › Academic › peer-review

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  10 Citations (Scopus)

  5 Downloads (Pure)

• Dry frictional contact of metal asperities: A dislocation dynamics analysis

  Sun, F., van der Giessen, E. & Nicola, L., 1-May-2016, In: Acta Materialia. 109, p. 162-169 8 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  21 Citations (Scopus)

  9 Downloads (Pure)

• Energetics of Transport through the Nuclear Pore Complex

  Ghavami, A., van der Giessen, E. & Onck, P. R., 19-Feb-2016, In: PLoS ONE. 11, 2, 13 p., e0148876.

  Research output: Contribution to journal › Article › Academic › peer-review

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  37 Citations (Scopus)

  298 Downloads (Pure)

• Erratum: "Asperity Interaction and Substrate Deformation in Statistical Summation Models of Contact Between Rough Surfaces" [Journal of Applied Mechanics, 81(4), p. 041012]

  Song, H., van der Giessen, E. & Vakis, A. I., 2016, In: Journal of Applied Mechanics-Transactions of the Asme. 83, 8, p. 087001 1 p.

  Research output: Contribution to journal › Erratum

  Open Access

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  2 Citations (Scopus)

  28 Downloads (Pure)

• Intrinsically Disordered Proteins: Gatekeepers of the Nuclear Pore Complex

  Ghavami, A., Veenhoff, L. M., Van der Giessen, E. & Onck, P. R., 16-Feb-2016, In: Biophysical Journal. 110, 3, suppl. 1, p. 358A-358A 1 p.

  Research output: Contribution to journal › Meeting Abstract › Academic

• Mechanisms of influenza viral membrane fusion

  Blijleven, J. S., Boonstra, S., Onck, P. R., van der Giessen, E. & van Oijen, A. M., Dec-2016, In: Seminars in Cell & Developmental Biology. 60, p. 78-88 11 p.

  Research output: Contribution to journal › Review article › peer-review

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  35 Citations (Scopus)

  21 Downloads (Pure)

• Strain gradient plasticity analysis of elasto-plastic contact between rough surfaces

  Song, H., van der Giessen, E. & Liu, X., Nov-2016, In: Journal of the Mechanics and Physics of Solids. 96, p. 18-28 11 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  40 Citations (Scopus)

  94 Downloads (Pure)
• 2015

  Computational modeling of rubber-toughening in amorphous thermoplastic polymers: a review

  van der Giessen, E. & Seelig, T., 21-Dec-2015, In: International Journal of Fracture. 196, 1-2, p. 207-222 16 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

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  10 Citations (Scopus)

  22 Downloads (Pure)

• Effect of Plastic Flattening on the Shearing Response of Metal Asperities: A Dislocation Dynamics Analysis

  Sun, F., Van der Giessen, E. & Nicola, L., Jul-2015, In: Journal of Applied Mechanics-Transactions of the Asme. 82, 7, 9 p., 071009.

  Research output: Contribution to journal › Article › Academic › peer-review

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  7 Citations (Scopus)

  9 Downloads (Pure)

• Indentation of elastically soft and plastically compressible solids

  Needleman, A., Tvergaard, V. & Van der Giessen, E., Aug-2015, In: Acta Mechanica Sinica. 31, 4, p. 473-480 8 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  19 Citations (Scopus)

  4 Downloads (Pure)

• Interaction between neighboring asperities during flattening: A discrete dislocation plasticity analysis

  Sun, F., Van der Giessen, E. & Nicola, L., Nov-2015, In: Mechanics of Materials. 90, p. 157-165 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  13 Citations (Scopus)

  7 Downloads (Pure)

• On the rate sensitivity in discrete dislocation plasticity

  Agnihotri, P. & van der Giessen, E., Nov-2015, In: Mechanics of Materials. 90, p. 37-46 10 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  33 Citations (Scopus)

  11 Downloads (Pure)

• Plastic Ploughing of a Sinusoidal Asperity on a Rough Surface

  Song, H., Dikken, R. J., Nicola, L. & Van der Giessen, E., Jul-2015, In: Journal of Applied Mechanics-Transactions of the Asme. 82, 7, 8 p., 071006.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

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  17 Citations (Scopus)

  8 Downloads (Pure)

• Plastic shear response of a single asperity: a discrete dislocation plasticity analysis

  Dikken, R. J., Van der Giessen, E. & Nicola, L., 2-Dec-2015, In: Philosophical Magazine. 95, 34, p. 3845-3858 14 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  3 Citations (Scopus)

  8 Downloads (Pure)

• Special Issue: Alan Needleman Symposium: New Frontiers in the Mechanics of Materials Biographical Sketch of Alan Needleman (2015)

  Benzerga, A. A. (ed.), Deshpande, V. S. (ed.) & Van der Giessen, E. (ed.), Jul-2015, In: Journal of Applied Mechanics-Transactions of the Asme. 82, 7 Special issue, 3 p., 070201.

  Research output: Contribution to journal › Special issue editing › Academic › peer-review

• Two Fundamental Mechanisms Govern the Stiffening of Cross-linked Networks

  Zagar, G., Onck, P. R. & van der Giessen, E., 24-Mar-2015, In: Biophysical Journal. 108, 6, p. 1470-1479 10 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  77 Citations (Scopus)

  247 Downloads (Pure)
• 2014

  Probing the Disordered Domain of the Nuclear Pore Complex through Coarse-Grained Molecular Dynamics Simulations

  Ghavami, A., Veenhoff, L. M., van der Giessen, E. & Onck, P. R., 16-Sept-2014, In: Biophysical Journal. 107, 6, p. 1393-1402 10 p.

  Research output: Contribution to journal › Article › Academic › peer-review

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  65 Citations (Scopus)

  283 Downloads (Pure)
• 2013

  Coarse-Grained Potentials for Local Interactions in Unfolded Proteins

  Ghavami, A., van der Giessen, E. & Onck, P. R., Jan-2013, In: Journal of Chemical Theory and Computation. 9, 1, p. 432-440 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review
  42 Citations (Scopus)