Research output per year
Research output per year
- 35 results
Search results
-
2024
Fine-scale contemporary recombination variation and its fitness consequences in adaptively diverging stickleback fish
Venu, V., Harjunmaa, E., Dreau, A., Brady, S., Absher, D., Kingsley, D. M. & Jones, F. C., Jul-2024, In: Nature Ecology & Evolution. 8, 7, p. 1337–1352 20 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Citations (Scopus)64 Downloads (Pure) -
Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation
Laine, J., Mak, S., Martins, N. F. G., Chen, X., Gilbert, M. T. P., Jones, F., Pedersen, M. W., Romundset, A. & Foote, A. D., 11-Mar-2024, In: Current Biology. 34, 5, p. 1142-1147 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus)6 Downloads (Pure) -
Reproductive isolation in a three‐way contact zone
Dean, L. L., Whiting, J., Jones, F. & MacColl, A. D. C., Mar-2024, In: Molecular Ecology. 33, 5, 17 p., e17275.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)82 Downloads (Pure) -
2023
EmbryoNet: Using deep learning to link embryonic phenotypes to signaling pathways
Čapek, D., Safroshkin, M., Morales-Navarrete, H., Toulany, N., Arutyunov, G., Kurzbach, A., Bihler, J., Hagauer, J., Kick, S., Jones, F., Jordan, B. & Müller, P., Jun-2023, In: Nature Methods. 20, 6, p. 815-823 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access24 Citations (Scopus) -
2022
Genomic changes underlying repeated niche shifts in an adaptive radiation
Marques, D. A., Jones, F. C., Di Palma, F., Kingsley, D. M. & Reimchen, T. E., Jun-2022, In: Evolution. 76, 6, p. 1301-1319 19 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access7 Citations (Scopus) -
2021
Ancient and modern stickleback genomes reveal the demographic constraints on adaptation
Kirch, M., Romundset, A., Gilbert, M. T. P., Jones, F. C. & Foote, A. D., 10-Mar-2021, In: Current Biology. 31, 9, p. 2027-2036 10 p.Research output: Contribution to journal › Article › Academic › peer-review
26 Citations (Scopus) -
Fitness maps to a large-effect locus in introduced stickleback populations
Schluter, D., Marchinko, K., Arnegard, M. E., Zhang, H., Brady, S. D., Jones, F. C., Bell, M. A. & Kingsley, D. M., 1-Jan-2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 3, e1914889118.Research output: Contribution to journal › Article › Academic › peer-review
36 Citations (Scopus) -
Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in Stanniocalcin2a
Roberts, K. G. A., Lee, D., Jones, F. C., Desmet, D., Bell, M. A. & Kingsley, D. M., Aug-2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 31, e2100694118.Research output: Contribution to journal › Article › Academic › peer-review
Open Access16 Citations (Scopus) -
Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution
Roberts Kingman, G. A., Vyas, D. N., Jones, F. C., Brady, S. D., Chen, H. I., Reid, K., Milhaven, M., Bertino, T. S., Aguirre, W. E., Heins, D. C., Von Hippel, F. A., Park, P. J., Kirch, M., Absher, D. M., Myers, R. M., Palma, F. D., Bell, M. A., Kingsley1, D. M. & Veeramah, K. R., Jun-2021, In: Science Advances. 7, 25, 12 p., eabg5285.Research output: Contribution to journal › Article › Academic › peer-review
Open Access64 Citations (Scopus) -
2020
mRNA extraction from gill tissue for RNA-sequencing
Verta, J.-P. & Jones, F., 5-Mar-2020, In: Bio-Protocol. 10, 5Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
2019
Genome-wide recombination map construction from single individuals using linked-read sequencing
Dréau, A., Venu, V., Avdievich, E., Gaspar, L. & Jones, F. C., 20-Sept-2019, In: Nature Communications. 10, 4309.Research output: Contribution to journal › Article › Academic › peer-review
Open Access36 Citations (Scopus) -
Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks
Verta, J.-P. & Jones, F., 15-May-2019, In: eLife. 8, 30 p., e43785.Research output: Contribution to journal › Article › Academic › peer-review
Open Access62 Citations (Scopus) -
2018
Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation
Marques, D. A., Jones, F. C., Di Palma, F., Kingsley, D. M. & Reimchen, T. E., Jun-2018, In: Nature Ecology & Evolution. 2, p. 1128–1138 11 p.Research output: Contribution to journal › Article › Academic › peer-review
65 Citations (Scopus) -
2017
Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments
Marques, D. A., Taylor, J. S., Jones, F. C., Di Palma, F., Kingsley, D. M. & Reimchen, T. E., Apr-2017, In: PLOS BIOLOGY. 24 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access58 Citations (Scopus) -
Detecting differential copy number variation between groups of samples
Lowe, C. B., Sanchez-Luege, N., Howes, T. R., Brady, S. D., Daugherty, R. R., Jones, F. C., Bell, M. A. & Kingsley, D. M., Dec-2017, In: Genome Research. 28, p. 256-265Research output: Contribution to journal › Article › Academic › peer-review
9 Citations (Scopus) -
Genetic coupling of female mate choice with polygenic ecological divergence facilitates stickleback speciation
Bay, R. A., Arnegard, M. E., Conte, G. L., Best, J., Bedford, N. L., McCann, S. R., Dubin, M. E., Chan, Y. F., Jones, F. C., Kingsley, D. M., Schluter, D. & Peichel, C. L., 19-Oct-2017, In: Current Biology. 27, 21, p. 3344-3349Research output: Contribution to journal › Article › Academic › peer-review
46 Citations (Scopus) -
2016
Evolving new skeletal traits by cis-regulatory changes in bone morphogenetic proteins
Indjeian, V. B., Kingman, G. A., Jones, F. C., Guenther, C. A., Grimwood, J., Schmutz, J., Myers, R. M. & Kingsley, D. M., 7-Jan-2016, In: Cell. 164, 1-2, p. 45-56 12 p.Research output: Contribution to journal › Article › Academic › peer-review
116 Citations (Scopus) -
2015
A recurrent regulatory change underlying altered expression and Wnt response of the stickleback armor plates gene EDA
O'Brown, N. M., Summers, B. R., Jones, F. C., Brady, S. D. & Kingsley, D. M., 28-Jan-2015, In: eLife. 4, 17 p., e05290.Research output: Contribution to journal › Article › Academic › peer-review
Open Access91 Citations (Scopus) -
Extent of QTL reuse during repeated phenotypic divergence of sympatric threespine stickleback
Conte, G. L., Arnegard, M. E., Best, J., Chan, Y. F., Jones, F. C., Kingsley, D. M., Schluter, D. & Peichel, C. L., 1-Nov-2015, In: Genetics. 201, 3, p. 1189-200 12 p.Research output: Contribution to journal › Article › Academic › peer-review
50 Citations (Scopus) -
2014
Genetics of ecological divergence during speciation
Arnegard, M. E., McGee, M. D., Matthews, B., Marchinko, K. B., Conte, G. L., Kabir, S., Bedford, N., Bergek, S., Chan, Y. F., Jones, F. C., Kingsley, D. M., Peichel, C. L. & Schluter, D., 17-Jul-2014, In: Nature. 511, 7509, p. 307-311 5 p.Research output: Contribution to journal › Article › Academic › peer-review
225 Citations (Scopus) -
2013
Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping
Deagle, B. E., Jones, F. C., Absher, D. M., Kingsley, D. M. & Reimchen, T. E., 4-Mar-2013, In: Molecular Ecology. 22, 7, p. 1917-1932 16 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access47 Citations (Scopus) -
2012
Genetic architecture of variation in the lateral line sensory system of threespine sticklebacks
Wark, A. R., Mills, M. G., Dang, L.-H., Chan, Y. F., Jones, F. C., Brady, S. D., Absher, D. M., Grimwood, J., Schmutz, J., Myers, R. M., Kingsley, D. M. & Peichel, C. L., Sept-2012, In: G3 (Bethesda, Md.). 2, 9, p. 1047-56 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access48 Citations (Scopus) -
Parallel selection mapping using artificially selected mice reveals body weight control loci
Chan, Y. F., Jones, F. C., McConnell, E., Bryk, J., Bünger, L. & Tautz, D., 8-May-2012, In: Current Biology. 22, 9, p. 794-800 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access50 Citations (Scopus) -
Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions
Deagle, B. E., Jones, F. C., Chan, Y. F., Absher, D. M., Kingsley, D. M. & Reimchen, T. E., 7-Apr-2012, In: Proceedings of the Royal Society B. 279, 1732, p. 1277-1286 10 p.Research output: Contribution to journal › Article › Academic › peer-review
122 Citations (Scopus) -
The genomic basis of adaptive evolution in threespine sticklebacks
Jones, F. C., Grabherr, M. G., Chan, Y. F., Russell, P., Mauceli, E., Johnson, J., Swofford, R., Pirun, M., Zody, M. C., White, S., Birney, E., Searle, S., Schmutz, J., Grimwood, J., Dickson, M. C., Myers, R. M., Miller, C. T., Summers, B. R., Knecht, A. K. & Brady, S. D. & 13 others, , 5-Apr-2012, In: Nature. 484, 7392, p. 55-61 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1366 Citations (Scopus) -
2011
A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks
Jones, F. C., Chan, Y. F., Schmutz, J., Grimwood, J., Brady, S. D., Southwick, A. M., Absher, D. M., Myers, R. M., Reimchen, T. E., Deagle, B. E., Schluter, D. & Kingsley, D. M., 22-Dec-2011, In: Current Biology. 22, 1, p. 83-90 8 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access188 Citations (Scopus) -
The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks
Greenwood, A. K., Jones, F. C., Chan, Y. F., Brady, S. D., Absher, D. M., Grimwood, J., Schmutz, J., Myers, R. M., Kingsley, D. M. & Peichel, C. L., Aug-2011, In: Heredity. 107, 2, p. 155-166 12 p.Research output: Contribution to journal › Article › Academic › peer-review
57 Citations (Scopus) -
2010
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
Chan, Y. F., Marks, M. E., Jones, F. C., Villarreal, G., Shapiro, M. D., Brady, S. D., Southwick, A. M., Absher, D. M., Grimwood, J., Schmutz, J., Myers, R. M., Petrov, D., Jónsson, B., Schluter, D., Bell, M. A. & Kingsley, D. M., 15-Jan-2010, In: Science. 327, 5963, p. 302-305 4 p.Research output: Contribution to journal › Article › Academic › peer-review
795 Citations (Scopus) -
2009
A role for a neo-sex chromosome in stickleback speciation
Kitano, J., Ross, J. A., Mori, S., Kume, M., Jones, F. C., Chan, Y. F., Absher, D. M., Grimwood, J., Schmutz, J., Myers, R. M., Kingsley, D. M. & Peichel, C. L., 22-Oct-2009, In: Nature. 461, 7267, p. 1079-1083 5 p.Research output: Contribution to journal › Article › Academic › peer-review
302 Citations (Scopus) -
2008
Lack of assortative mating between incipient species of stickleback from a hybrid zone
Jones, F. C., Brown, C. & Braithwaite, V. A., 1-Apr-2008, In: Behaviour. 145, 4-5, p. 463-484 22 p.Research output: Contribution to journal › Article › Academic › peer-review
25 Citations (Scopus) -
2007
Correlation between boldness and body mass in natural populations of the poeciliid Brachyrhaphis episcopi
Brown, C., Jones, F. & Braithwaite, V. A., Dec-2007, In: Journal of Fish Biology. 71, 6, p. 1590-1601 12 p.Research output: Contribution to journal › Article › Academic › peer-review
139 Citations (Scopus) -
Distribution and habitats of mosquito larvae in the Kingdom of Tonga
Harding, J. S., Brown, C., Jones, F. & Taylor, R., Nov-2007, In: Australian Journal of Entomology. 46, 4, p. 332-338 7 p.Research output: Contribution to journal › Article › Academic › peer-review
7 Citations (Scopus) -
2006
Reproductive isolation in a threespine stickleback hybrid zone
Jones, F. C., Brown, C., Pemberton, J. M. & Braithwaite, V. A., Sept-2006, In: Journal of Evolutionary Biology. 19, 5, p. 1531-1544 14 p.Research output: Contribution to journal › Article › Academic › peer-review
81 Citations (Scopus) -
2005
In situ examination of boldness-shyness traits in the tropical poeciliid, Brachyraphis episcopi
Brown, C., Jones, F. & Braithwaite, V., Nov-2005, In: Animal Behaviour. 70, 5, p. 1003-1009 7 p.Research output: Contribution to journal › Article › Academic › peer-review
300 Citations (Scopus) -
2002
Patterns of colonization in a metapopulation of grey seals
Gaggiotti, O. E., Jones, F., Lee, W. M., Amos, W., Harwood, J. & Nichols, R. A., 28-Mar-2002, In: Nature. 416, 6879, p. 424-427 4 p.Research output: Contribution to journal › Article › Academic › peer-review
76 Citations (Scopus)