Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Dive into the research topics where Hermie J.M. Harmsen is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 1 Similar Profiles
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Research output
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A convenient and versatile culturomics platform to expand the human gut culturome of Lachnospiraceae and Oscillospiraceae
Plomp, N., Liu, L., Walters, L., Bus-Spoor, C., Khan, M. T., Sheridan, P. O., Veloo, A. C. M., Walker, A. W., Harmsen, H. J. M. & Tsompanidou, E., 2025, In: Beneficial microbes. 16, p. 51-66 16 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile3 Citations (Scopus)27 Downloads (Pure) -
Culturomics of the pig tonsil microbiome identifies new species and an untapped source of novel antimicrobials
de Oliveira, I. M. F., Fredriksen, S., Gutiérrez, M. F., Harmsen, H. J. M., Boekhorst, J., van Baarlen, P. & Wells, J. M., 29-Mar-2025, In: Microbiome. 13, 18 p., 86.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Downloads (Pure) -
Identification and characterization of Faecalibacterium prophages rich in diversity-generating retroelements
Gulyaeva, A., Liu, L., Garmaeva, S., Kruk, M., Weersma, R. K., Harmsen, H. J. M. & Zhernakova, A., Feb-2025, In: Microbiology Spectrum. 13, 2, e0106624.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)29 Downloads (Pure) -
Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status
Nooij, S., Plomp, N., Sanders, I. M. J. G., Schout, L., van der Meulen, A. E., Terveer, E. M., Norman, J. M., Karcher, N., Larralde, M. F., Vossen, R. H. A. M., Kloet, S. L., Faber, K. N., Harmsen, H. J. M., Zeller, G. F., Kuijper, E. J., Smits, W. K. & Ducarmon, Q. R., Jan-2025, In: Nature Communications. 16, 14 p., 1182.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Downloads (Pure) -
A metagenomic approach to unveil the association between fecal gut microbiota and short-chain fatty acids in diarrhea caused by diarrheagenic Escherichia coli in children
Gallardo, P., Izquierdo, M., Viver, T., Bustos-Caparros, E., Piras, D., Vidal, R. M., Harmsen, H. M. J. & Farfan, M. J., 30-Apr-2024, In: Microbial Cell. 11, 1, p. 116-127 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile3 Citations (Scopus)51 Downloads (Pure)
Projects
- 1 Finished
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AL-II: Eco-evolutionary dynamics and control of the gut microbiome
Weissing, F. (PI), van Doorn, S. (PI), Harmsen, H. J. M. (PI) & Kort, K. (PhD student)
01/09/2017 → 01/04/2023
Project: Research
Activities
- 1 Professional or public presentation
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De bacterie en het brein
Sommer, I. (Speaker) & Harmsen, H. J. M. (Speaker)
5-Feb-2024Activity: Talk and presentation › Professional or public presentation › Popular
Datasets
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Additional file 2 of Weight shapes the intestinal microbiome in preterm infants: results of a prospective observational study
Heida, F. H. (Contributor), Kooi, E. M. W. (Contributor), Wagner, J. (Contributor), Nguyen, T. Y. (Contributor), Hulscher, J. B. F. (Contributor), Zoonen ,van, A. (Contributor), Bos, A. (Contributor), Harmsen, H. J. M. (Contributor) & de Goffau, M. C. (Contributor), figshare Academic Research System, 22-Jul-2021
DOI: 10.6084/m9.figshare.15033307.v1
Dataset
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Additional file 3 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium
Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. W. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-Oct-2021
DOI: 10.6084/m9.figshare.16863921.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863921/1
Dataset
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MITIGATION OF MARMOSET MONKEY EAE THROUGH A DIETARY SUPPLEMENT
Harmsen, H. J. M. (Creator), NCBI, 19-Jan-2021
https://www.ncbi.nlm.nih.gov/bioproject
Dataset
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Heterogeneous antimicrobial activity in broncho-alveolar aspirates from mechanically ventilated intensive care unit patients
Seinen, J. (Creator), Dieperink, W. (Creator), Mekonnen, S. A. (Creator), Lisotto, P. (Creator), Harmsen, H. J. M. (Contributor), Hiemstra, B. (Creator), Ott, A. (Contributor), Schultz, D. (Creator), Lalk, M. (Creator), Oswald, S. (Creator), Hammerschmidt, S. (Creator), de Smet, A. M. G. A. (Contributor) & van Dijl, J. M. (Contributor), Taylor & Francis Group, 30-Oct-2019
DOI: 10.6084/m9.figshare.10074902, https://tandf.figshare.com/articles/Heterogeneous_antimicrobial_activity_in_broncho-alveolar_aspirates_from_mechanically_ventilated_intensive_care_unit_patients/10074902
Dataset
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Additional file 8 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium
Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. W. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-Oct-2021
DOI: 10.6084/m9.figshare.16863942.v1, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863942/1
Dataset
Press/Media
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Dit nieuwe antibioticum laat goede bacteriën gewoon met rust
31/05/2024
1 Media contribution
Press/Media: Expert Comment › Popular
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Een nieuw inzicht in hoe we planten verteren
15/03/2024
1 Media contribution
Press/Media: Expert Comment › Popular
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Darmbacteriën worden door bloedgroep A suikers gevoed en houden je gezond
Yang-Fu, J. & Harmsen, H. J. M.
05/01/2024 → 08/01/2024
2 items of Media coverage
Press/Media: Expert Comment › Popular
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Is een hartaanval of beroerte overdraagbaar?
23/01/2020
1 Media contribution
Press/Media: Expert Comment › Popular
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Is het écht zo vies om je schoenen aan te houden in huis?
23/04/2019
1 Media contribution
Press/Media: Expert Comment › Popular