Research output per year
Research output per year
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2025
Application of the Time-Domain Multichromophoric Fluorescence Resonant Energy Transfer Method in the NISE Programme
Zhong, K., Erić, V., Nguyen, H. L., van Adrichem, K. E., ten Hoven, G. A. H., Manrho, M., Knoester, J. & Jansen, T. L. C., 14-Jan-2025, In: Journal of Chemical Theory and Computation. 21, 1, p. 254-266 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus) -
2024
Coarse-Grained Approach to Simulate Signatures of Excitation Energy Transfer in Two-Dimensional Electronic Spectroscopy of Large Molecular Systems
Zhong, K., Nguyen, H. L., Do, T. N., Tan, H. S., Knoester, J. & Jansen, T. L. C., 23-Jul-2024, In: Journal of Chemical Theory and Computation. 20, 14, p. 6111-6124 14 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)29 Downloads (Pure) -
Inter-subunit energy transfer processes in a minimal plant photosystem II supercomplex
Nguyen, H. L., Do, T. N., Zhong, K., Akhtar, P., Jansen, T. L. C., Knoester, J., Caffarri, S., Lambrev, P. & Tan, H. S., 23-Feb-2024, In: Science Advances. 10, 8, 11 p., eadh0911.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Citations (Scopus)47 Downloads (Pure) -
2023
An efficient time-domain implementation of the multichromophoric Förster resonant energy transfer method
Zhong, K., Nguyen, H. L., Do, T. N., Tan, H. S., Knoester, J. & Jansen, T. L. C., 28-Feb-2023, In: Journal of Chemical Physics. 158, 6, p. 1710–1722 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Citations (Scopus)217 Downloads (Pure) -
Watching Molecular Nanotubes Self-Assemble in Real Time
Manrho, M., Krishnaswamy, S. R., Kriete, B., Patmanidis, I., de Vries, A. H., Marrink, S. J., Jansen, T. L. C., Knoester, J. & Pshenichnikov, M. S., 18-Oct-2023, In: Journal of the American Chemical Society. 145, 41, p. 22494–22503 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile3 Citations (Scopus)63 Downloads (Pure) -
2022
Optical signatures of the coupling between excitons and charge transfer states in linear molecular aggregates
Manrho, M., Jansen, T. L. C. & Knoester, J., 14-Jun-2022, In: Journal of Chemical Physics. 156, 22, 13 p., 224112.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)90 Downloads (Pure) -
Structural Disorder as the Origin of Optical Properties and Spectral Dynamics in Squaraine Nano-Aggregates
Bernhardt, R., Manrho, M., Zablocki, J., Rieland, L., Lützen, A., Schiek, M., Meerholz, K., Zhu, J., Jansen, T. L. C., Knoester, J. & Van Loosdrecht, P. H. M., 26-Oct-2022, In: Journal of the American Chemical Society. 144, 42, p. 19372–19381 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile13 Citations (Scopus)215 Downloads (Pure) -
Ultrafast Excitation Energy Transfer Dynamics in the LHCII–CP29–CP24 Subdomain of Plant Photosystem II
Nhut, T., Nguyen, H. L., Akhtar, P., Zhong, K., Jansen, T. L. C., Knoester, J., Caffarri, S., Lambrev, P. H. & Tan, H.-S., 19-May-2022, In: The Journal of Physical Chemistry Letters. 13, 19, p. 4263–4271 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile11 Citations (Scopus)209 Downloads (Pure) -
2021
An Exciton Dynamics Model of Bryopsis corticulans Light-Harvesting Complex II
Nguyen, H. L., Do, T. N., Akhtar, P., Jansen, T. L. C., Knoester, J., Wang, W., Shen, J.-R., Lambrev, P. H. & Tan, H.-S., 4-Feb-2021, In: Journal of Physical Chemistry B. 125, 4, p. 1134-1143 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile6 Citations (Scopus)169 Downloads (Pure) -
Limitations of linear dichroism spectroscopy for elucidating structural issues of light-harvesting aggregates in chlorosomes
Günther, L. M., Knoester, J. & Köhler, J., 2-Feb-2021, In: Molecules. 26, 4, 16 p., 899.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Citations (Scopus)83 Downloads (Pure) -
Probing size variations of molecular aggregates inside chlorosomes using single-object spectroscopy
Kunsel, T., Günther, L. M., Köhler, J., Jansen, T. L. C. & Knoester, J., 28-Sept-2021, In: Journal of Chemical Physics. 155, 12, 14 p., 124310.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile6 Citations (Scopus)100 Downloads (Pure) -
Scaling relations of exciton diffusion in linear aggregates with static and dynamic disorder
Kunsel, T., Jansen, T. L. C. & Knoester, J., 7-Oct-2021, In: Journal of Chemical Physics. 155, 13, 13 p., 134305.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile5 Citations (Scopus)142 Downloads (Pure) -
2020
Comparison of methods to study excitation energy transfer in molecular multichromophoric systems
Bondarenko, A. S., Knoester, J. & Jansen, T. L. C., 15-Jan-2020, In: Chemical Physics. 529, 12 p., 110478.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile21 Citations (Scopus)225 Downloads (Pure) -
Exciton localization in tubular molecular aggregates: Size effects and optical response
Bondarenko, A. S., Jansen, T. L. C. & Knoester, J., 21-May-2020, In: Journal of Chemical Physics. 152, 19, 12 p., 194302.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile20 Citations (Scopus)224 Downloads (Pure) -
Molecular versus excitonic disorder in individual artificial light-harvesting systems
Kriete, B., Bondarenko, A. S., Alessandri, R., Patmanidis, I., Krasnikov, V. V., Jansen, T. L. C., Marrink, S. J., Knoester, J. & Pshenichnikov, M. S., 21-Oct-2020, In: Journal of the American Chemical Society. 142, 42, p. 18073-18085 13 p., jacs.0c07392.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile15 Citations (Scopus)188 Downloads (Pure) -
Multiscale modeling of molecular structure and optical properties of complex supramolecular aggregates
Bondarenko, A. S., Patmanidis, I., Alessandri, R., Souza, P. C. T., Jansen, T. L. C., de Vries, A. H., Marrink, S. J. & Knoester, J., 14-Nov-2020, In: Chemical Science. 11, 42, p. 11514-11524 11 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile22 Citations (Scopus)131 Downloads (Pure) -
Plasmon-assisted two-photon absorption in a semiconductor quantum dot-metallic nanoshell composite
Nugroho, B. S., Iskandar, A. A., Malyshev, V. A. & Knoester, J., 15-Jul-2020, In: Physical Review B. 102, 4, 8 p., 045405.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile23 Citations (Scopus)70 Downloads (Pure) -
Unraveling intra-aggregate structural disorder using single-molecule spectroscopy
Kunsel, T., Loehner, A., Mayo, J. J., Koehler, J., Jansen, T. L. C. & Knoester, J., 7-Oct-2020, In: Journal of Chemical Physics. 153, 13, 12 p., 134304.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Citations (Scopus)168 Downloads (Pure) -
2019
Interplay between structural hierarchy and exciton diffusion in artificial light harvesting
Kriete, B., Luettig, J., Kunsel, T., Maly, P., Jansen, T. L. C., Knoester, J., Brixner, T. & Pshenichnikov, M. S., 10-Oct-2019, In: Nature Communications. 10, 11 p., 4615.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile51 Citations (Scopus)200 Downloads (Pure) -
Plasmon-assisted two-photon Rabi oscillations in a semiconductor quantum dot - metal nanoparticle heterodimer
Nugroho, B. S., Iskandar, A. A., Malyshev, V. A. & Knoester, J., 11-Feb-2019, In: Physical Review B. 99, 7, 9 p., 075302.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile25 Citations (Scopus)126 Downloads (Pure) -
Spectral and Structural Variations of Biomimetic Light-Harvesting Nanotubes
Loehner, A., Kunsel, T., Roehr, M. I. S., Jansen, T. L. C., Sengupta, S., Wuerthner, F., Knoester, J. & Koehler, J., 6-Jun-2019, In: JOURNAL OF PHYSICAL CHEMISTRY LETTERS. 10, 11, p. 2715-2724 19 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile23 Citations (Scopus)127 Downloads (Pure) -
2018
Identification and characterization of diverse coherences in the Fenna-Matthews-Olson complex
Thyrhaug, E., Tempelaar, R., Alcocer, M. J. P., Zidek, K., Bina, D., Knoester, J., Jansen, T. L. C. & Zigmantas, D., Jul-2018, In: Nature Chemistry. 10, 7, p. 780-786 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile201 Citations (Scopus)269 Downloads (Pure) -
Structural Variations in Chlorosomes from Wild-Type and a bchQR Mutant of Chlorobaculum tepidum Revealed by Single-Molecule Spectroscopy
Guenther, L. M., Loehner, A., Reiher, C., Kunsel, T., Jansen, T. L. C., Tank, M., Bryant, D. A., Knoester, J. & Koehler, J., 5-Jul-2018, In: Journal of Physical Chemistry B. 122, 26, p. 6712-6723 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile24 Citations (Scopus)147 Downloads (Pure) -
The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin
Farag, M. H., Jansen, T. L. C. & Knoester, J., 14-May-2018, In: PPCP : Physical Chemistry Chemical Physics. 20, 18, p. 12746-12754 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile14 Citations (Scopus)72 Downloads (Pure) -
Time-dependent transport of a localized surface plasmon through a linear array of metal nanoparticles: Precursor and normal mode contributions
Compaijen, P. J., Malyshev, V. A. & Knoester, J., 20-Feb-2018, In: Physical Review. B: Condensed Matter and Materials Physics. 97, 8, 11 p., 085428.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile11 Citations (Scopus)352 Downloads (Pure) -
2017
Correction to “Structure of Light-Harvesting Aggregates in Individual Chlorosomes”
Guenther, L. M., Jendrny, M., Bloemsma, E. A., Tank, M., Oostergetel, G. T., Bryant, D. A., Knoester, J. & Kohler, J., 15-Jun-2017, In: Journal of Physical Chemistry B. 121, 23, p. 5882 1 p.Research output: Contribution to journal › Erratum
Open AccessFile54 Downloads (Pure) -
Direct Imaging of Exciton Transport in Tubular Porphyrin Aggregates by Ultrafast Microscopy
Wan, Y., Stradomska, A., Knoester, J. & Huang, L., 8-May-2017, In: Journal of the American Chemical Society. 139, 21, p. 7287-7293 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile76 Citations (Scopus)82 Downloads (Pure) -
Exciton-Exciton Annihilation Is Coherently Suppressed in H-Aggregates, but Not in J-Aggregates
Tempelaar, R., Jansen, T. L. C. & Knoester, J., 21-Dec-2017, In: The Journal of Physical Chemistry Letters. 8, 24, p. 6113-6117 5 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile46 Citations (Scopus)381 Downloads (Pure) -
Instabilities in the optical response of a semiconductor quantum dot-metal nanoparticle heterodimer: self-oscillations and chaos
Nugroho, B. S., Iskandar, A. A., Malyshev, V. A. & Knoester, J., Jan-2017, In: Journal of Optics. 19, 1, 10 p., 015004.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile9 Citations (Scopus)70 Downloads (Pure) -
Spectral line shapes in linear absorption and two-dimensional spectroscopy with skewed frequency distributions
Farag, M. H., Hoenders, B. J., Knoester, J. & Jansen, T. L. C., 21-Jun-2017, In: Journal of Chemical Physics. 146, 23, 9 p., 234201.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile13 Citations (Scopus)420 Downloads (Pure) -
Steering Self-Assembly of Amphiphilic Molecular Nanostructures via Halogen Exchange
Kriete, B., Bondarenko, A. S., Jumde, V. R., Franken, L. E., Minnaard, A. J., Jansen, T. L. C., Knoester, J. & Pshenichnikov, M. S., 6-Jul-2017, In: The Journal of Physical Chemistry Letters. 8, 13, p. 2895-2901 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile39 Citations (Scopus)451 Downloads (Pure) -
The Primary Photochemistry of Vision Occurs at the Molecular Speed Limit
Johnson, P. J. M., Farag, M. H., Halpin, A., Morizumi, T., Prokhorenko, V. I., Knoester, J., Jansen, T. L. C., Ernst, O. P. & Miller, R. J. D., 27-Apr-2017, In: The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical. 121, 16, p. 4040-4047 8 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile48 Citations (Scopus)421 Downloads (Pure) -
2016
Charge recombination suppressed by destructive quantum interference in heterojunction materials
Tempelaar, R., Koster, J. A., Havenith, R., Knoester, J. & Jansen, T., 20-Aug-2016, In: Abstracts of Papers of the American Chemical Society. 252, 2 p.Research output: Contribution to journal › Meeting Abstract › Academic
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Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials
Tempelaar, R., Koster, L. J. A., Havenith, R. W. A., Knoester, J. & Jansen, T. L. C., 7-Jan-2016, In: The Journal of Physical Chemistry Letters. 7, 1, p. 198-203 6 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile11 Citations (Scopus)46 Downloads (Pure) -
Correction to “Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials”
Tempelaar, R., Koster, L. J. A., Havenith, R. W. A., Knoester, J. & Jansen, T. L. C., 15-Sept-2016, In: The Journal of Physical Chemistry Letters. 7, 18, p. 3659-3659 1 p.Research output: Contribution to journal › Erratum
Open AccessFile42 Downloads (Pure) -
Elliptically polarized modes for the unidirectional excitation of surface plasmon polaritons
Compaijen, P. J., Malyshev, V. A. & Knoester, J., 22-Feb-2016, In: Optics Express. 24, 4, p. 3858-3872 15 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile3 Citations (Scopus)277 Downloads (Pure) -
How two-dimensional brick layer J-aggregates differ from linear ones: Excitonic properties and line broadening mechanisms
Dijkstra, A. G., Duan, H.-G., Knoester, J., Nelson, K. A. & Cao, J., 7-Apr-2016, In: Journal of Chemical Physics. 144, 13, 10 p., 134310.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile12 Citations (Scopus)274 Downloads (Pure) -
Laser-Limited Signatures of Quantum Coherence
Tempelaar, R., Halpin, A., Johnson, P. J. M., Cai, J., Murphy, R. S., Knoester, J., Miller, R. J. D. & Jansen, T. L. C., 19-May-2016, In: The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory. 120, 19, p. 3042-3048 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile21 Citations (Scopus)32 Downloads (Pure) -
Probing the Interstate Coupling near a Conical Intersection by Optical Spectroscopy
Farag, M. H., Jansen, T. L. C. & Knoester, J., 1-Sept-2016, In: The Journal of Physical Chemistry Letters. 7, 17, p. 3328-3334 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile22 Citations (Scopus)126 Downloads (Pure) -
Quantum Diffusion on Molecular Tubes: Universal Scaling of the 1D to 2D Transition
Chuang, C., Lee, C. K., Moix, J. M., Knoester, J. & Cao, J., 11-May-2016, In: Physical Review Letters. 116, 19, 6 p., 196803.Research output: Contribution to journal › Article › Academic › peer-review
40 Citations (Scopus) -
Structure of Light-Harvesting Aggregates in Individual Chlorosomes
Guenther, L. M., Jendrny, M., Bloemsma, E. A., Tank, M., Oostergetel, G. T., Bryant, D. A., Knoester, J. & Koehler, J., 23-Jun-2016, In: The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical. 120, 24, p. 5367-5376 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile58 Citations (Scopus)86 Downloads (Pure) -
Vibronic effects and destruction of exciton coherence in optical spectra of J-aggregates: A variational polaron transformation approach
Bloemsma, E. A., Silvis, M. H., Stradomska, A. & Knoester, J., 20-Dec-2016, In: Chemical Physics. 481, p. 250-261 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile8 Citations (Scopus)305 Downloads (Pure) -
2015
Atomistic Modeling of Two-Dimensional Electronic Spectra and Excited State Dynamics for a Light Harvesting 2 Complex
van der Vegte, N., Prajapati, J., Kleinekathoefer, U., Knoester, J. & Jansen, T., 2015, In: The Journal of Physical Chemistry B. 119, 4, p. 1302–1313 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile63 Citations (Scopus)96 Downloads (Pure) -
Engineering plasmon dispersion relations: hybrid nanoparticle chain - substrate plasmon polaritons
Compaijen, P. J., Malyshev, V. A. & Knoester, J., 9-Feb-2015, In: Optics Express. 23, 3, p. 2280-2292 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile17 Citations (Scopus)487 Downloads (Pure) -
Exciton mobility control through sub − Å packing modifications in molecular crystals
Hestand, N. J., Tempelaar, R., Knoester, J., Jansen, T. L. C. & Spano, F. C., 18-May-2015, In: Physical Review. B: Condensed Matter and Materials Physics. 91, 19, 7 p., 195315.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile54 Citations (Scopus)446 Downloads (Pure) -
Nonlinear Actuation Dynamics of Driven Casimir Oscillators with Rough Surfaces
Broer, W., Waalkens, H., Svetovoy, V., Knoester, J. & Palasantzas, G., 25-Nov-2015, In: Physical Review Applied. 4, 5, 7 p., 054016.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile50 Citations (Scopus)319 Downloads (Pure) -
Signature of Anomalous Exciton Localization in the Optical Response of Self-Assembled Organic Nanotubes
Bloemsma, E. A., Vlaming, S. M., Malyshev, V. A. & Knoester, J., 17-Apr-2015, In: Physical Review Letters. 114, 15, 5 p., 156804.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile21 Citations (Scopus)340 Downloads (Pure) -
Tailoring optical response of a hybrid comprising a quantum dimer emitter strongly coupled to a metallic nanoparticle
Nugroho, B. S., Malyshev, V. A. & Knoester, J., 30-Oct-2015, In: Physical Review B. 92, 16, 12 p., 165432.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile30 Citations (Scopus)357 Downloads (Pure) -
2014
Exciton Level Structure and Dynamics in Tubular Porphyrin Aggregates
Wan, Y., Stradomska, A., Fong, S., Guo, Z., Schaller, R. D., Wiederrecht, G. P., Knoester, J. & Huang, L., 30-Oct-2014, In: The Journal of Physical Chemistry. C: Nanomaterials and Interfaces. 118, 43, p. 24854-24865 12 p.Research output: Contribution to journal › Article › Academic › peer-review
35 Citations (Scopus) -
First-Principles Calculation of the Optical Properties of an Amphiphilic Cyanine Dye Aggregate
Haverkort, F., Stradomska, A., Vries, A. H. D. & Knoester, J., 2014, In: The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory. 118, 6, p. 1012-1023 12 p.Research output: Contribution to journal › Article › Academic
11 Citations (Scopus)