Research output per year
Research output per year
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
-
Characterization of mobile genetic elements in multidrug-resistant Bacteroides fragilis isolates from different hospitals in the Netherlands
Boiten, K. E., Kuijper, E. J., Schuele, L., van Prehn, J., Bode, L. G. M., Maat, I., van Asten, S. A. V., Notermans, D. W., Rossen, J. W. A. & Veloo, A. C. M., Jun-2023, In: Anaerobe. 81, 8 p., 102722.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Downloads (Pure) -
Longitudinal study of the short- and long-term effects of hospitalisation and oral trimethoprim-sulfadiazine administration on the equine faecal microbiome and resistome
Theelen, M. J. P., Luiken, R. E. C., Wagenaar, J. A., Sloet van Oldruitenborgh-Oosterbaan, M. M., Rossen, J. W. A., Schaafstra, F. J. W. C., van Doorn, D. A. & Zomer, A. L., Feb-2023, In: Microbiome. 11, 1, 16 p., 33.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)5 Downloads (Pure) -
Antibiotic Resistance and Molecular Characterization of Cronobacter sakazakii Strains Isolated from Powdered Infant Formula Milk
Pakbin, B., Brück, W. M., Allahyari, S., Rossen, J. W. A. & Mahmoudi, R., 1-Apr-2022, In: Foods. 11, 8, 11 p., 1093.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile10 Citations (Scopus)27 Downloads (Pure) -
Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region
Schuele, L., Lizarazo-Forero, E., Strutzberg-Minder, K., Schütze, S., Löbert, S., Lambrecht, C., Harlizius, J., Friedrich, A. W., Peter, S., Rossen, J. W. A. & Couto, N., Jul-2022, In: Transboundary and emerging diseases. 69, 4, p. 2306-2319 14 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)90 Downloads (Pure) -
A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing
Petrillo, M., Fabbri, M., Kagkli, D. M., Querci, M., Van den Eede, G., Alm, E., Aytan-Aktug, D., Capella-Gutierrez, S., Carrillo, C., Cestaro, A., Chan, K. G., Coque, T., Endrullat, C., Gut, I., Hammer, P., Kay, G. L., Madec, J. Y., Mather, A. E., McHardy, A. C., Naas, T., & 11 others, 16-Mar-2022, In: F1000Research. 10, 37 p., 80.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)8 Downloads (Pure)
Activities
-
Exploitation of microbial forensics and nanotechnology for the monitoring of emerging pathogens
John Rossen (Speaker)
2-Mar-2023Activity: Talk and presentation › Academic presentation › Academic
-
(Precised) metagenomics for microbial diagnosing and typing
John Rossen (Invited speaker)
3-Feb-2023Activity: Talk and presentation › Academic presentation › Academic
-
Geavanceerde moleculaire technieken voor de diagnose en preventie van infectieziekten
John Rossen (Keynote speaker)
22-Nov-2022Activity: Talk and presentation › Professional or public presentation › Popular
-
Molecular Diagnostics and Surveillance of Dengueviruses
John Rossen (Keynote speaker)
14-Feb-2020Activity: Talk and presentation › Academic presentation › Academic
-
EU-JRC Workshop on Antimicrobial Resistance Databases
John Rossen (Contributor)
21-May-2019Activity: Organising and attending an event › Organising and contributing to an event › Professional
Datasets
-
Dataset: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
Monge Gomes do Couto, N. (Creator), Schüle, L. (Creator), Raangs, E. (Creator), Machado, M. P. (Creator), Marques de Sousa Mendes, C. (Creator), Jesus, T. F. (Creator), Fliss, M. (Creator), Rosema, S. (Creator), Ramirez, M. (Creator), Carriço, J. A. (Creator), Autenrieth, I. B. (Creator), Friedrich, A. (Creator), Peter, S. (Creator) & Rossen, J. (Creator), University of Groningen, 10-May-2018
DOI: 10.6084/m9.figshare.5679376, https://figshare.com/articles/cgMLST_and_accessory_ref-seq/5679376
Dataset
-
Additional file 1: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes
Van Hoek, A. H. A. M. (Contributor), Van Veldhuizen, J. N. J. (Contributor), Friesema, I. (Contributor), Coipan, C. (Contributor), Rossen, J. (Contributor), Bergval, I. L. (Contributor) & Franz, E. (Contributor), University of Groningen, 5-Apr-2019
DOI: 10.6084/m9.figshare.7961237.v1
Dataset
-
DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenomic sequencing
Marques de Sousa Mendes, C. (Contributor), Lizarazo Forero, E. (Contributor), Machado, M. P. (Contributor), Silva, D. N. (Contributor), Tami, A. (Contributor), Ramirez, M. (Contributor), Couto, N. (Contributor), Rossen, J. (Contributor) & Carriço, J. A. (Contributor), University of Groningen, 6-Jan-2020
DOI: 10.6084/m9.figshare.11316599.v1
Dataset
-
Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study
Damasco, P. V. (Contributor), Correal, J. C. D. (Contributor), Cruz-Campos, A. C. D. (Contributor), Wajsbrot, B. R. (Contributor), Cunha, R. G. D. (Contributor), Fonseca, A. G. D. (Contributor), Castier, M. B. (Contributor), Fortes, C. Q. (Creator), Jazbick, J. C. (Contributor), Lemos, E. R. S. D. (Contributor), Rossen, J. (Contributor), Leão, R. D. S. (Contributor), Hirata Junior, R. (Contributor) & Guaraldi, A. L. D. M. (Contributor), University of Groningen, 12-Jun-2019
DOI: 10.6084/m9.figshare.8260109.v1
Dataset
-
Additional file 3 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium
Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-Oct-2021
DOI: 10.6084/m9.figshare.16863921.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863921/1
Dataset
Press/Media
-
NGS is transforming diagnostics, but is it right for everyone?
11/11/2021
1 item of Media coverage
Press/Media: Expert Comment › Popular
-
Factors that can influence gut bacteria in horses explored in study
12/06/2021
1 item of Media coverage
Press/Media: Expert Comment › Popular
-
DER KAMPF GEGEN DIE KRANKENHAUSKEIME
05/12/2018
1 Media contribution
Press/Media: Public Engagement Activities › Popular
-
Wat kan het UMCG leren van de gezondheid van zeehonden?
13/09/2018
1 Media contribution
Press/Media: Public Engagement Activities › Popular
-
Strijd tegen resistente bacteriën
Jan-Willem Dik & Johannes Rossen
04/03/2017
1 item of Media coverage
Press/Media: Research › Popular