Research output per year
Research output per year
Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Research output
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Antibiotic Resistance and Molecular Characterization of Cronobacter sakazakii Strains Isolated from Powdered Infant Formula Milk
Pakbin, B., Brück, W. M., Allahyari, S., Rossen, J. W. A. & Mahmoudi, R., 1-Apr-2022, In: Foods. 11, 8, 11 p., 1093.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile -
Exploring a prolonged enterovirus C104 infection in a severely ill patient using nanopore sequencing
Cassidy, H., Schuele, L., Lizarazo-Forero, E., Couto, N., Rossen, J. W. A., Friedrich, A. W., van Leer-Buter, C. & Niesters, H. G. M., 18-Mar-2022, In: Virus evolution. 8, 1, 11 p., veab109.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile -
MALDI-TOF MS Using a Custom-Made Database, Biomarker Assignment, or Mathematical Classifiers Does Not Differentiate Shigella spp. and Escherichia coli
van den Beld, M. J. C., Rossen, J. W. A., Evers, N., Kooistra-Smid, M. A. M. D. & Reubsaet, F. A. G., 14-Feb-2022, In: Microorganisms. 10, 2, 13 p., 435.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile -
The Microbiome in Bronchial Biopsies from Smokers and Ex-Smokers with Stable COPD - A Metatranscriptomic Approach
Ditz, B., Boekhoudt, J., Couto, N., Brandsma, C. A., Hiemstra, P. S., Tew, G. W., Neighbors, M., Grimbaldeston, M. A., Timens, W., Kerstjens, H. A. M., Rossen, J. W. A., Guryev, V., van den Berge, M. & Faiz, A., 4-Feb-2022, (E-pub ahead of print) In: COPD: Journal of Chronic Obstructive Pulmonary Disease. 7 p.Research output: Contribution to journal › Article › Academic › peer-review
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Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region
Schuele, L., Lizarazo-Forero, E., Strutzberg-Minder, K., Schütze, S., Löbert, S., Lambrecht, C., Harlizius, J., Friedrich, A. W., Peter, S., Rossen, J. W. A. & Couto, N., 4-Aug-2021, (E-pub ahead of print) In: Transboundary and emerging diseases. p. 1-14 14 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile30 Downloads (Pure)
Activities
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Next generation sequencing: first diagnostic one-stop show in clinical microbiology
John Rossen (Speaker)
10-Jan-2019Activity: Talk and presentation › Professional or public presentation › Professional
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Univ Tubingen, Eberhard Karls University of Tubingen, Interfac Inst Microbiol & Infect Med, Univ Hosp Tubingen
John Rossen (Visiting researcher)
17-Jul-2019 → 18-Jul-2019Activity: Visiting an external institution › Academic
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Scientific Spring Meeting KNVM&NVMM 2019
John Rossen (Invited speaker)
26-Mar-2019Activity: Talk and presentation › Professional or public presentation › Professional
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2018 JPIAMR Transnational Networks Start-up meeting
John Rossen (Organiser)
19-Feb-2019 → 20-Feb-2019Activity: Organising and attending an event › Organising and contributing to an event › Academic
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EU-JRC Workshop on Antimicrobial Resistance Databases
John Rossen (Contributor)
21-May-2019Activity: Organising and attending an event › Organising and contributing to an event › Professional
Datasets
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Additional file 1: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes
Van Hoek, A. H. A. M. (Contributor), Van Veldhuizen, J. N. J. (Contributor), Friesema, I. (Contributor), Coipan, C. (Contributor), Rossen, J. (Contributor), Bergval, I. L. (Contributor) & Franz, E. (Contributor), University of Groningen, 5-Apr-2019
DOI: 10.6084/m9.figshare.7961237.v1
Dataset
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An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae
Nepal, S. (Contributor), Bonn, F. (Contributor), Grasso, S. (Contributor), Stobernack, T. (Contributor), de Jong, A. (Contributor), Zhou, K. (Contributor), Wedema, R. (Contributor), Rosema, S. (Contributor), Becher, D. (Contributor), Otto, A. (Contributor), Rossen, J. (Contributor), van Dijl, J. M. (Contributor) & Bathoorn, E. (Contributor), University of Groningen, 13-Aug-2018
DOI: 10.6084/m9.figshare.6960083.v1
Dataset
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Additional file 2: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes
Van Hoek, A. H. A. M. (Contributor), Van Veldhuizen, J. N. J. (Contributor), Friesema, I. (Contributor), Coipan, C. (Contributor), Rossen, J. (Contributor), Bergval, I. L. (Contributor) & Franz, E. (Contributor), University of Groningen, 5-Apr-2019
DOI: 10.6084/m9.figshare.7961243.v1
Dataset
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DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenomic sequencing
Marques de Sousa Mendes, C. (Contributor), Lizarazo Forero, E. (Contributor), Machado, M. P. (Contributor), Silva, D. N. (Contributor), Tami, A. (Contributor), Ramirez, M. (Contributor), Monge Gomes do Couto, N. (Contributor), Rossen, J. (Contributor) & Carriço, J. A. (Contributor), University of Groningen, 6-Jan-2020
DOI: 10.6084/m9.figshare.11316599.v1
Dataset
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Table S1 from After the bite: bacterial transmission from grey seals (Halichoerus grypus) to harbour porpoises (Phocoena phocoena)
Gilbert, M. J. (Contributor), IJsseldijk, L. L. (Contributor), Rubio-García, A. (Contributor), Gröne, A. (Contributor), Duim, B. (Contributor), Rossen, J. (Contributor), Zomer, A. L. (Contributor) & Wagenaar, J. A. (Contributor), University of Groningen, 7-May-2020
DOI: 10.6084/m9.figshare.12254486.v1
Dataset
Press / Media
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NGS is transforming diagnostics, but is it right for everyone?
11/11/2021
1 item of Media coverage
Press/Media: Expert Comment › Popular
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Factors that can influence gut bacteria in horses explored in study
12/06/2021
1 item of Media coverage
Press/Media: Expert Comment › Popular
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DER KAMPF GEGEN DIE KRANKENHAUSKEIME
05/12/2018
1 Media contribution
Press/Media: Public Engagement Activities › Popular
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Wat kan het UMCG leren van de gezondheid van zeehonden?
13/09/2018
1 Media contribution
Press/Media: Public Engagement Activities › Popular
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Strijd tegen resistente bacteriën
Jan-Willem Dik & Johannes Rossen
04/03/2017
1 item of Media coverage
Press/Media: Research › Popular