Research output per year
Research output per year
Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Research output
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Antibiotic Resistance and Molecular Characterization of Cronobacter sakazakii Strains Isolated from Powdered Infant Formula Milk
Pakbin, B., Brück, W. M., Allahyari, S., Rossen, J. W. A. & Mahmoudi, R., 1-Apr-2022, In: Foods. 11, 8, 11 p., 1093.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)6 Downloads (Pure) -
Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region
Schuele, L., Lizarazo-Forero, E., Strutzberg-Minder, K., Schütze, S., Löbert, S., Lambrecht, C., Harlizius, J., Friedrich, A. W., Peter, S., Rossen, J. W. A. & Couto, N., Jul-2022, In: Transboundary and emerging diseases. 69, 4, p. 2306-2319 14 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)38 Downloads (Pure) -
A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing
Petrillo, M., Fabbri, M., Kagkli, D. M., Querci, M., Van den Eede, G., Alm, E., Aytan-Aktug, D., Capella-Gutierrez, S., Carrillo, C., Cestaro, A., Chan, K. G., Coque, T., Endrullat, C., Gut, I., Hammer, P., Kay, G. L., Madec, J. Y., Mather, A. E., McHardy, A. C., Naas, T. & 11 others, , 16-Mar-2022, In: F1000Research. 10, 37 p., 80.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile -
Exploring a prolonged enterovirus C104 infection in a severely ill patient using nanopore sequencing
Cassidy, H., Schuele, L., Lizarazo-Forero, E., Couto, N., Rossen, J. W. A., Friedrich, A. W., van Leer-Buter, C. & Niesters, H. G. M., 18-Mar-2022, In: Virus evolution. 8, 1, 11 p., veab109.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile5 Downloads (Pure) -
Genomic Investigation of Two Acinetobacter baumannii Outbreaks in a Veterinary Intensive Care Unit in The Netherlands
Naing, S., Hordijk, J., Duim, B., Broens, E. M., van der Graaf-Van Bloois, L., Rossen, J. W., Robben, J. H., Leendertse, M., Wagenaar, J. A. & Zomer, A. L., Feb-2022, In: Pathogens. 11, 2, 14 p., 123.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)1 Downloads (Pure)
Activities
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Next generation sequencing: first diagnostic one-stop show in clinical microbiology
John Rossen (Speaker)
10-Jan-2019Activity: Talk and presentation › Professional or public presentation › Professional
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8th Congress of European Microbiologists
John Rossen (Invited speaker)
10-Jul-2019Activity: Talk and presentation › Academic presentation › Academic
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REMMDI
John Rossen (Invited speaker)
12-Apr-2019Activity: Talk and presentation › Professional or public presentation › Professional
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EU-JRC Workshop on Benchmarking of NGS bioinformatics pipelines for AMR
John Rossen (Contributor)
27-May-2019 → 28-May-2019Activity: Organising and attending an event › Organising and contributing to an event › Professional
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EU-JRC Workshop on Antimicrobial Resistance Databases
John Rossen (Contributor)
21-May-2019Activity: Organising and attending an event › Organising and contributing to an event › Professional
Datasets
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Additional file 9 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium
Lisotto, P. (Contributor), Raangs, E. (Contributor), Monge Gomes do Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-Oct-2021
DOI: 10.6084/m9.figshare.16863945.v1, https://springernature.figshare.com/articles/dataset/Additional_file_9_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863945/1
Dataset
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DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenomic sequencing
Marques de Sousa Mendes, C. (Contributor), Lizarazo Forero, E. (Contributor), Machado, M. P. (Contributor), Silva, D. N. (Contributor), Tami, A. (Contributor), Ramirez, M. (Contributor), Monge Gomes do Couto, N. (Contributor), Rossen, J. (Contributor) & Carriço, J. A. (Contributor), University of Groningen, 6-Jan-2020
DOI: 10.6084/m9.figshare.11316599.v1
Dataset
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Additional file 3 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium
Lisotto, P. (Contributor), Raangs, E. (Contributor), Monge Gomes do Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-Oct-2021
DOI: 10.6084/m9.figshare.16863921.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863921/1
Dataset
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Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study
Damasco, P. V. (Contributor), Correal, J. C. D. (Contributor), Cruz-Campos, A. C. D. (Contributor), Wajsbrot, B. R. (Contributor), Cunha, R. G. D. (Contributor), Fonseca, A. G. D. (Contributor), Castier, M. B. (Contributor), Fortes, C. Q. (Creator), Jazbick, J. C. (Contributor), Lemos, E. R. S. D. (Contributor), Rossen, J. (Contributor), Leão, R. D. S. (Contributor), Hirata Junior, R. (Contributor) & Guaraldi, A. L. D. M. (Contributor), University of Groningen, 12-Jun-2019
DOI: 10.6084/m9.figshare.8260109.v1
Dataset
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Data from: Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis
Peker, N. (Contributor), Schüle, L. (Contributor), Kok, N. (Contributor), Terrazos, M. (Contributor), Neuenschwander, S. M. (Contributor), de Beer, J. (Contributor), Akkerman, O. (Contributor), Peter, S. (Contributor), Ramette, A. (Contributor), Merker, M. (Contributor), Niemann, S. (Contributor), Monge Gomes do Couto, N. (Contributor), Sinha, B. (Contributor) & Rossen, J. (Contributor), figshare Academic Research System, 24-Nov-2021
DOI: 10.6084/m9.figshare.17075987.v1
Dataset
Press / Media
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NGS is transforming diagnostics, but is it right for everyone?
11/11/2021
1 item of Media coverage
Press/Media: Expert Comment › Popular
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Factors that can influence gut bacteria in horses explored in study
12/06/2021
1 item of Media coverage
Press/Media: Expert Comment › Popular
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DER KAMPF GEGEN DIE KRANKENHAUSKEIME
05/12/2018
1 Media contribution
Press/Media: Public Engagement Activities › Popular
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Wat kan het UMCG leren van de gezondheid van zeehonden?
13/09/2018
1 Media contribution
Press/Media: Public Engagement Activities › Popular
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Strijd tegen resistente bacteriën
Jan-Willem Dik & Johannes Rossen
04/03/2017
1 item of Media coverage
Press/Media: Research › Popular