Marc Jan Bonder

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49 Article
6 Letter
5 Meeting Abstract
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- 1 Review article
- 1 Thesis fully internal (DIV)

OTTERS: a powerful TWAS framework leveraging summary-level reference data
eQTLGen Consortium, Dai, Q., Zhou, G., Zhao, H., Võsa, U., Franke, L., Battle, A., Teumer, A., Lehtimäki, T., Raitakari, O. T., Esko, T., Epstein, M. P. & Yang, J., Dec-2023, In: Nature Communications. 14, 13 p., 1271.
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Genetic, parental and lifestyle factors influence telomere length
Andreu-Sánchez, S., Aubert, G., Ripoll-Cladellas, A., Henkelman, S., Zhernakova, D. V., Sinha, T., Kurilshikov, A., Cenit, M. C., Jan Bonder, M., Franke, L., Wijmenga, C., Fu, J., van der Wijst, M. G. P., Melé, M., Lansdorp, P. & Zhernakova, A., 9-Jun-2022, In: Communications biology. 5, 1, 13 p., 565.
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4 Citations (Scopus)

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Genome-wide study of DNA methylation shows alterations in metabolic, inflammatory, and cholesterol pathways in ALS
BIOS Consortium, Brain MEND Consortium, Hop, P. J., Zwamborn, R. A. J., Hannon, E., Shireby, G. L., Nabais, M. F., Walker, E. M., van Rheenen, W., van Vugt, J. J. F. A., Dekker, A. M., Westeneng, H. J., Tazelaar, G. H. P., van Eijk, K. R., Moisse, M., Baird, D., Al Khleifat, A., Iacoangeli, A., Ticozzi, N., Ratti, A., & 25 othersCooper-Knock, J., Morrison, K. E., Shaw, P. J., Basak, A. N., Chiò, A., Calvo, A., Moglia, C., Canosa, A., Brunetti, M., Grassano, M., Gotkine, M., Lerner, Y., Zabari, M., Vourc'H, P., Corcia, P., Couratier, P., Mora Pardina, J. S., Salas, T., Dion, P., Ross, J. P., Henderson, R. D., Mathers, S., McCombe, P. A., Needham, M. & Veldink, J. H., 23-Feb-2022, In: Science Translational Medicine. 14, 633, 16 p., eabj0264.
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15 Citations (Scopus)

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DNA methylation signatures of aggression and closely related constructs: A meta-analysis of epigenome-wide studies across the lifespan
BIOS Consortium, van Dongen, J., Hagenbeek, F. A., Suderman, M., Roetman, P. J., Sugden, K., Chiocchetti, A. G., Ismail, K., Mulder, R. H., Hafferty, J. D., Adams, M. J., Walker, R. M., Morris, S. W., Lahti, J., Küpers, L. K., Escaramis, G., Alemany, S., Jan Bonder, M., Meijer, M., Ip, H. F., & 31 othersJansen, R., Baselmans, B. M. L., Parmar, P., Lowry, E., Streit, F., Sirignano, L., Send, T. S., Frank, J., Jylhävä, J., Wang, Y., Mishra, P. P., Colins, O. F., Corcoran, D. L., Poulton, R., Mill, J., Hannon, E., Arseneault, L., Korhonen, T., Vuoksimaa, E., Felix, J. F., Bakermans-Kranenburg, M. J., Campbell, A., Czamara, D., Binder, E., Corpeleijn, E., Gonzalez, J. R., Grazuleviciene, R., van der Meer, D., Davies, G. E., Snieder, H. & Franke, L., 2021, In: Molecular Psychiatry. 26, p. 2148-2162 15 p.
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Large-scale association analyses identify host factors influencing human gut microbiome composition
MiBioGen Consortium Initiative, Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Ruehlemann, M. C., Turpin, W., Moon, J-Y., Kim, H-N., Lull, K., & 31 othersBarkan, E., Shah, S. A., Fornage, M., Szopinska-Tokov, J., Wallen, Z. D., Borisevich, D., Agreus, L., Andreasson, A., Bang, C., Bedrani, L., Bell, J. T., Bisgaard, H., Boehnke, M., Boomsma, D. I., Burk, R. D., Claringbould, A., Croitoru, K., Davies, G. E., van Duijn, C. M., Duijts, L., Falony, G., Fu, J., van der Graaf, A., Hansen, T., Vosa, U., Westra, H-J., Wijmenga, C., Lerch, M. M., Franke, L., Sanna, S. & Zhernakova, A., 18-Jan-2021, In: Nature Genetics. 53, p. 156-165 19 p.
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213 Citations (Scopus)

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Additional file 5: of The emerging landscape of dynamic DNA methylation in early childhood
Annesi-Maesano, I. (Contributor), Kull, I. (Contributor), Just, J. (Contributor), Baïz, N. (Contributor), Sunyer, J. (Contributor), Jankipersadsing, S. (Contributor), van der Vlies, P. (Contributor), Bonder, M. J. (Contributor), Koppelman, G. (Contributor), Bustamante, M. (Contributor), Antó, J. M. (Contributor), Wijmenga, C. (Contributor), Xu, C. (Contributor), Bousquet, J. (Contributor), van Diemen, C. (Contributor), Zhernakova, S. (Contributor), Gehring, U. (Contributor), Li, Y. (Contributor), Rijkom, B. (Contributor), Postma, D. (Contributor), Melén, E. (Contributor), Kere, J. (Contributor) & Söderhäll, C. (Contributor), University of Groningen, 6-Jan-2017
DOI: 10.6084/m9.figshare.c.3659303_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3659303_d5.v1
Dataset
Additional file 5 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
Wijmenga, C. (Contributor), Verbiest, M. (Contributor), Hofman, B. A. (Contributor), Vermaat, M. (Contributor), Nooren, I. (Contributor), Mei, H. (Contributor), Eline Slagboom (Contributor), van Iterson, M. (Contributor), Veldink, J. H. (Contributor), van Galen, M. (Contributor), van 't Hof, P. (Contributor), van Meurs, J. (Contributor), 't Hoen, P. (Contributor), van Heemst, D. (Contributor), Franke, L. (Contributor), Zhernakova, S. (Contributor), Moed, M. (Contributor), Verkerk, M. (Contributor), Pool, R. (Contributor), Beekman, M. (Contributor), van Dijk, F. (Contributor), van den Berg, L. H. (Contributor), Zhernakova, D. (Contributor), Bot, J. (Contributor), Hottenga, J. J. (Contributor), Lakenberg, N. (Contributor), van der Breggen, R. (Contributor), van der Kallen, C. J. H. (Contributor), Bonder, M. J. (Contributor), Deelen, P. (Contributor), Jansen, R. (Contributor), Schalkwijk, C. G. (Contributor), Jhamai, P. M. (Contributor), Swertz, M. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Isaacs, A. (Contributor), Kielbasa, S. M. (Contributor), Luijk, R. (Contributor), Uitterlinden, A. G. (Contributor), van Dongen, J. (Contributor), van Greevenbroek, M. M. J. (Contributor), Arindrarto, W. (Contributor), van Rooij, J. (Contributor), Heijmans, B. T. (Contributor), Stehouwer, C. D. A. (Contributor), van Zwet, E. W. (Contributor), 't Hoen, P. A. C. (Contributor), Suchiman, H. E. D. (Contributor), Deelen, J. (Contributor), van Duijn, C. M. (Contributor) & Boomsma, D. I. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d1.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d1.v1
Dataset
Additional file 7 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
van Galen, M. (Contributor), Luijk, R. (Contributor), van der Kallen, C. J. H. (Contributor), 't Hoen, P. A. C. (Contributor), van der Breggen, R. (Contributor), van Dongen, J. (Contributor), van Heemst, D. (Contributor), van Iterson, M. (Contributor), van Rooij, J. (Contributor), Lakenberg, N. (Contributor), van 't Hof, P. (Contributor), Verkerk, M. (Contributor), Vermaat, M. (Contributor), Beekman, M. (Contributor), Verbiest, M. (Contributor), Boomsma, D. I. (Contributor), Jhamai, P. M. (Contributor), Bot, J. (Contributor), Suchiman, H. E. D. (Contributor), Franke, L. (Contributor), Heijmans, B. T. (Contributor), Hottenga, J. J. (Contributor), Moed, M. (Contributor), Deelen, J. (Contributor), Deelen, P. (Contributor), Nooren, I. (Contributor), Jansen, R. (Contributor), Swertz, M. (Contributor), 't Hoen, P. (Contributor), Zhernakova, S. (Contributor), van Dijk, F. (Contributor), Pool, R. (Contributor), Hofman, B. A. (Contributor), van den Berg, L. H. (Contributor), Uitterlinden, A. G. (Contributor), Bonder, M. J. (Contributor), Kielbasa, S. M. (Contributor), van Meurs, J. (Contributor), Eline Slagboom (Contributor), Stehouwer, C. D. A. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Zhernakova, D. (Contributor), Schalkwijk, C. G. (Contributor), Mei, H. (Contributor), Arindrarto, W. (Contributor), Wijmenga, C. (Contributor), van Zwet, E. W. (Contributor), van Duijn, C. M. (Contributor), Veldink, J. H. (Contributor), Isaacs, A. (Contributor) & van Greevenbroek, M. M. J. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d5.v1
Dataset
Additional file 4 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
van der Breggen, R. (Contributor), Hofman, B. A. (Contributor), Pool, R. (Contributor), Nooren, I. (Contributor), Deelen, P. (Contributor), Vermaat, M. (Contributor), Zhernakova, S. (Contributor), van Zwet, E. W. (Contributor), Heijmans, B. T. (Contributor), Moed, M. (Contributor), van den Berg, L. H. (Contributor), Arindrarto, W. (Contributor), Suchiman, H. E. D. (Contributor), Zhernakova, D. (Contributor), van 't Hof, P. (Contributor), van Dongen, J. (Contributor), Bonder, M. J. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Schalkwijk, C. G. (Contributor), Kielbasa, S. M. (Contributor), van Iterson, M. (Contributor), van der Kallen, C. J. H. (Contributor), van Duijn, C. M. (Contributor), Deelen, J. (Contributor), Veldink, J. H. (Contributor), van Heemst, D. (Contributor), 't Hoen, P. (Contributor), Mei, H. (Contributor), Jhamai, P. M. (Contributor), van Dijk, F. (Contributor), Jansen, R. (Contributor), Eline Slagboom (Contributor), Luijk, R. (Contributor), Wijmenga, C. (Contributor), van Rooij, J. (Contributor), Bot, J. (Contributor), Lakenberg, N. (Contributor), van Galen, M. (Contributor), Isaacs, A. (Contributor), Boomsma, D. I. (Contributor), 't Hoen, P. A. C. (Contributor), van Meurs, J. (Contributor), Verkerk, M. (Contributor), Stehouwer, C. D. A. (Contributor), Beekman, M. (Contributor), Swertz, M. (Contributor), Uitterlinden, A. G. (Contributor), Franke, L. (Contributor), Hottenga, J. J. (Contributor), Verbiest, M. (Contributor) & van Greevenbroek, M. M. J. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d6.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d6.v1
Dataset
Additional file 6 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
't Hoen, P. A. C. (Contributor), Verbiest, M. (Contributor), Vermaat, M. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Verkerk, M. (Contributor), Heijmans, B. T. (Contributor), van der Breggen, R. (Contributor), Nooren, I. (Contributor), Isaacs, A. (Contributor), 't Hoen, P. (Contributor), Lakenberg, N. (Contributor), Mei, H. (Contributor), van Dijk, F. (Contributor), Wijmenga, C. (Contributor), Zhernakova, D. (Contributor), van Heemst, D. (Contributor), Boomsma, D. I. (Contributor), Stehouwer, C. D. A. (Contributor), Deelen, J. (Contributor), Bonder, M. J. (Contributor), Hofman, B. A. (Contributor), Schalkwijk, C. G. (Contributor), Bot, J. (Contributor), Zhernakova, S. (Contributor), Kielbasa, S. M. (Contributor), van Duijn, C. M. (Contributor), Franke, L. (Contributor), Uitterlinden, A. G. (Contributor), Beekman, M. (Contributor), Jhamai, P. M. (Contributor), Moed, M. (Contributor), Luijk, R. (Contributor), van Meurs, J. (Contributor), Arindrarto, W. (Contributor), van Zwet, E. W. (Contributor), Jansen, R. (Contributor), Swertz, M. (Contributor), van 't Hof, P. (Contributor), van Rooij, J. (Contributor), van Dongen, J. (Contributor), van den Berg, L. H. (Contributor), Veldink, J. H. (Contributor), Eline Slagboom (Contributor), van Greevenbroek, M. M. J. (Contributor), Deelen, P. (Contributor), Suchiman, H. E. D. (Contributor), van Iterson, M. (Contributor), van der Kallen, C. J. H. (Contributor), Hottenga, J. J. (Contributor), Pool, R. (Contributor) & van Galen, M. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d7.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d7.v1
Dataset

Genetic regulation of blood cells: Proximity of a gene to a genetic change plays an important role
Marc Jan Bonder, Annique Claringbould & Patrick Deelen
22/09/2021
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Marc Jan Bonder

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OTTERS: a powerful TWAS framework leveraging summary-level reference data

Genetic, parental and lifestyle factors influence telomere length

Genome-wide study of DNA methylation shows alterations in metabolic, inflammatory, and cholesterol pathways in ALS

DNA methylation signatures of aggression and closely related constructs: A meta-analysis of epigenome-wide studies across the lifespan

Large-scale association analyses identify host factors influencing human gut microbiome composition

Additional file 5: of The emerging landscape of dynamic DNA methylation in early childhood

Additional file 5 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

Additional file 7 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

Additional file 4 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

Additional file 6 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

Genetic regulation of blood cells: Proximity of a gene to a genetic change plays an important role

Marc Jan Bonder

Network

Research output

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Press/Media