Research output per year
Research output per year
- 46 results
Search results
-
2024
Hepatic ChREBP orchestrates intrahepatic carbohydrate metabolism to limit hepatic glucose 6-phosphate and glycogen accumulation in a mouse model for acute Glycogen Storage Disease type Ib (6675 words)
Krishnamurthy, K. A., Rutten, M. G. S., Hoogerland, J. A., Van Dijk, T. H., Bos, T., Koehorst, M., De Vries, M. P., Kloosterhuis, N. J., Havinga, H., Schomakers, B. V., van Weeghel, M., Wolters, J. C., Bakker, B. M. & Oosterveer, M. H., Jan-2024, In: Molecular metabolism. 79, 12 p., 101838.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile71 Downloads (Pure) -
2022
DNAJB6-Containing Extracellular Vesicles as Chaperone Delivery Systems: A Proteomic Analysis
Joshi, B. S., Garcia Romeu, H., Aliyandi, A., de Vries, M. P. & Zuhorn, I. S., Nov-2022, In: Pharmaceutics. 14, 11, 16 p., 2485.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile1 Citation (Scopus)67 Downloads (Pure) -
Identification of Damage Associated Molecular Patterns and Extracellular Matrix Proteins as Major Constituents of the Surface Proteome of Lung Implantable Silicone/Nitinol Devices
Gupta, A., Burgess, J. K., Borghuis, T., de Vries, M. P., Kuipers, J., Permentier, H. P., Bischoff, R., Slebos, D.-J. & Pouwels, S. D., 15-Mar-2022, In: Acta Biomaterialia. p. 209-218Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile5 Citations (Scopus)153 Downloads (Pure) -
Probing the Conformational States of Thimet Oligopeptidase in Solution
Marcondes, M. F. M., Santos, G. S., Bronze, F., Machado, M. F. M., Perez, K. R., Hesselink, R., de Vries, M. P., Broos, J. & Oliveira, V., 1-Jul-2022, In: International Journal of Molecular Sciences. 23, 13, 18 p., 7297.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile52 Downloads (Pure) -
2021
The Isotopic Ac-IP Tag Enables Multiplexed Proteome Quantification in Data-Independent Acquisition Mode
Tian, X., de Vries, M. P., Permentier, H. P. & Bischoff, R., 15-Jun-2021, In: Analytical Chemistry. 93, 93, p. 8196–8202Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Citations (Scopus)134 Downloads (Pure) -
The USP7-TRIM27 axis mediates non-canonical PRC1.1 function and is a druggable target in leukemia
Maat, H., Atsma, T. J., Hogeling, S. M., Lopez, A. R., Jaques, J., Olthuis, M., de Vries, M. P., Gravesteijn, C., Brouwers-Vos, A. Z., van der Meer, N., Datema, S., Salzbrunn, J., Huls, G., Baas, R., Martens, J. H. A., van den Boom, V. & Schuringa, J. J., 21-May-2021, In: iScience . 24, 5, 29 p., 102435.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile25 Citations (Scopus)158 Downloads (Pure) -
2020
A Collision-Induced Dissociation Cleavable Isobaric Tag for Peptide Fragment Ion-Based Quantification in Proteomics
Tian, X., de Vries, M. P., Permentier, H. P. & Bischoff, R., 4-Sept-2020, In: Journal of Proteome Research. 19, 9, p. 3817-3824 8 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile8 Citations (Scopus)180 Downloads (Pure) -
A Versatile Isobaric Tag Enables Proteome Quantification in Data-Dependent and Data-Independent Acquisition Modes
Tian, X., de Vries, M. P., Permentier, H. P. & Bischoff, R., 15-Dec-2020, In: Analytical Chemistry. 92, 24, p. 16149-16157 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile19 Citations (Scopus)200 Downloads (Pure) -
Impact of spatial proximity on territoriality among human skin bacteria
Hernandez-Valdes, J. A., Zhou, L., de Vries, M. P. & Kuipers, O. P., 1-Dec-2020, In: NPJ biofilms and microbiomes. 6, 1, 13 p., 30.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile12 Citations (Scopus)141 Downloads (Pure) -
Selective Maleylation-Directed Isobaric Peptide Termini Labeling for Accurate Proteome Quantification
Tian, X., de Vries, M. P., Visscher, S. W. J., Permentier, H. P. & Bischoff, R., 2-Jun-2020, In: Analytical Chemistry. 92, 11, p. 7836-7844 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile11 Citations (Scopus)195 Downloads (Pure) -
2017
Semi-microbiological synthesis of an active lysinoalanine-bridged analog of glucagon-like-peptide-1
Kuipers, A., de Vries, L., de Vries, M. P., Rink, R., Bosma, T. & Moll, G. N., May-2017, In: Peptides. 91, p. 33-39 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)44 Downloads (Pure) -
Specific Affinity Enrichment of Electrochemically Cleaved Peptides Based on Cu(II)-Mediated Spirolactone Tagging
Zhang, T., de Vries, M. P., Permentier, H. P. & Bischoff, R., 5-Jul-2017, In: Analytical Chemistry. 89, 13, p. 7123-7129 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile6 Citations (Scopus)306 Downloads (Pure) -
The interaction of fluorescent nanodiamond probes with cellular media
Hemelaar, S. R., Nagl, A., Bigot, F., Rodriquez Garcia, M., de Vries, M. P., Chipaux, M. & Schirhagl, R., Apr-2017, In: Microchimica Acta. 184, 4, p. 1001-1009 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile77 Citations (Scopus)474 Downloads (Pure) -
The use of metabolic profiling to identify insulin resistance in veal calves
Pantophlet, A. J., Roelofsen, H., de Vries, M. P., Gerrits, W. J. J., van den Borne, J. J. G. C. & Vonk, R. J., 15-Jun-2017, In: PLoS ONE. 12, 6, 12 p., e0179612.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Citations (Scopus)320 Downloads (Pure) -
2016
Efficient and Selective Chemical Labeling of Electrochemically Generated Peptides Based on Spirolactone Chemistry
Zhang, T., Niu, X., Yuan, T., Tessari, M., de Vries, M. P., Permentier, H. P. & Bischoff, R., 21-Jun-2016, In: Analytical Chemistry. 88, 12, p. 6465-6471 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Citations (Scopus)60 Downloads (Pure) -
Incorporation of tryptophan analogues into the lantibiotic nisin
Zhou, L., Shao, J., Li, Q., van Heel, A. J., de Vries, M. P., Broos, J. & Kuipers, O. P., May-2016, In: Amino Acids. 48, 5, p. 1309-1318 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile37 Citations (Scopus)327 Downloads (Pure) -
2015
Functional and Structural Characterization of an Unusual Cofactor-Independent Oxygenase
Baas, B.-J., Poddar, H., Geertsema, E. M., Rozeboom, H. J., de Vries, M., Permentier, H. P., Thunnissen, A.-M. W. H. & Poelarends, G. J., 10-Feb-2015, In: Biochemistry. 54, 5, p. 1219-1232 14 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile12 Citations (Scopus)84 Downloads (Pure) -
Quantitative proteomics analyses of activation states of human THP-1 macrophages
Meijer, K., Weening, D., de Vries, M. P., Priebe, M. G., Vonk, R. J. & Roelofsen, J., 14-Oct-2015, In: Journal of proteomics. 128, p. 164-172 9 p.Research output: Contribution to journal › Article › Academic › peer-review
17 Citations (Scopus) -
Significance of surface charge and shell material of superparamagnetic iron oxide nanoparticle (SPION) based core/shell nanoparticles on the composition of the protein corona
Sakulkhu, U., Mahmoudi, M., Maurizi, L., Coullerez, G., Hofmann-Amtenbrink, M., de Vries, M., Motazacker, M., Rezaee, F. & Hofmann, H., 2015, In: Biomaterials Science. 3, 2, p. 265-278 14 p.Research output: Contribution to journal › Article › Academic › peer-review
140 Citations (Scopus) -
Zeolite Nanoparticles for Selective Sorption of Plasma Proteins
Rahimi, M., Ng, E.-P., Bakhtiari, K., Vinciguerra, M., Ahmad, H. A., Awala, H., Mintova, S., Daghighi, M., Rostami, F. B., de Vries, M., Motazacker, M. M., Peppelenbosch, M. P., Mahmoudi, M. & Rezaee, F., 30-Nov-2015, In: Scientific Reports. 5, 12 p., 17259.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile59 Citations (Scopus)500 Downloads (Pure) -
2014
Ex situ evaluation of the composition of protein corona of intravenously injected superparamagnetic nanoparticles in rats
Sakulkhu, U., Maurizi, L., Mahmoudi, M., Motazacker, M., de Vries, M., Gramoun, A., Beuzelin, M.-G. O., Vallee, J.-P., Rezaee, F. & Hofmann, H., 2014, In: Nanoscale. 6, 19, p. 11439-11450 12 p.Research output: Contribution to journal › Article › Academic › peer-review
105 Citations (Scopus) -
Proteome of human plasma very low-density lipoprotein and low-density lipoprotein exhibits a link with coagulation and lipid metabolism
Dashty Rahmatabady, M., Motazacker, M. M., Levels, J., de Vries, M., Mahmoudi, M., Peppelenbosch, M. & Rezaee, F., Mar-2014, In: Thrombosis and Haemostasis. 111, 3, p. 518-530 13 p.Research output: Contribution to journal › Article › Academic › peer-review
89 Citations (Scopus) -
2013
Corona protein composition and cytotoxicity evaluation of ultra-small zeolites synthesized from template free precursor suspensions
Laurent, S., Ng, E.-P., Thirifays, C., Lakiss, L., Goupil, G.-M., Mintova, S., Burtea, C., Oveisi, E., Hebert, C., de Vries, M., Motazacker, M. M., Rezaee, F. & Mahmoudi, M., 2013, In: Toxicology research. 2, 4, p. 270-279 10 p.Research output: Contribution to journal › Article › Academic › peer-review
44 Citations (Scopus) -
Proteomics of defined platelets
Rezaee, F., Alamdary Badlou, B. & de Vries, M., Jul-2013, In: Journal of Thrombosis and Haemostasis. 11, p. 1201-1201 1 p.Research output: Contribution to journal › Meeting Abstract › Academic
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2012
Electrochemical oxidation of quaternary ammonium electrolytes: Unexpected side reactions in organic electrochemistry
Nouri Nigjeh, E., de Vries, M., Bruins, A. P., Bischoff, R. & Permentier, H. P., Jul-2012, In: Electrochemistry communications. 21, p. 54-57 4 p.Research output: Contribution to journal › Article › Academic › peer-review
11 Citations (Scopus) -
Separating the wheat from the chaff: a prioritisation pipeline for the analysis of metabolomics datasets
Jankevics, A., Merlo, M. E., de Vries, M., Vonk, R. J., Takano, E. & Breitling, R., Jun-2012, In: Metabolomics. 8, 1, p. S29-S36 8 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile42 Citations (Scopus)374 Downloads (Pure) -
2011
Comparative analysis of the human hepatic and adipose tissue transcriptomes during LPS-induced inflammation leads to the identification of differential biological pathways and candidate biomarkers
Szalowska, E., Dijkstra, M., Elferink, M. G. L., Weening, D., de Vries, M., Bruinenberg, M., Hoek, A., Roelofsen, H., Groothuis, G. M. M. & Vonk, R. J., 6-Oct-2011, In: BMC Medical Genomics. 4, 17 p., 71.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile21 Citations (Scopus)201 Downloads (Pure) -
Human Primary Adipocytes Exhibit Immune Cell Function: Adipocytes Prime Inflammation Independent of Macrophages
Meijer, K., de Vries, M., Al-Lahham, S., Bruinenberg, M., Weening, D., Dijkstra, M., Kloosterhuis, N., van der Leij, R. J., van der Want, H., Kroesen, B.-J., Vonk, R. & Rezaee, F., 23-Mar-2011, In: PLoS ONE. 6, 3, 13 p., 17154.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile172 Citations (Scopus)324 Downloads (Pure) -
Metabolomic analysis of a synthetic metabolic switch in Streptomyces coelicolor A3(2)
Jankevics, A., Merlo, M. E., de Vries, M., Vonk, R. J., Takano, E. & Breitling, R., Dec-2011, In: Proteomics. 11, 24, p. 4622-4631 10 p.Research output: Contribution to journal › Article › Academic › peer-review
18 Citations (Scopus)194 Downloads (Pure) -
No de novo sulforaphane biosynthesis in broccoli seedlings
Gorissen, A., Kraut, N. U., de Visser, R., de Vries, M., Roelofsen, H. & Vonk, R. J., 1-Jul-2011, In: Food Chemistry. 127, 1, p. 192-196 5 p.Research output: Contribution to journal › Article › Academic › peer-review
17 Citations (Scopus) -
Organ-specific candidate biomarkers of inflammation found by comparative analyses of the human hepatic and adipose tissue transcriptome and secretome during LPS treatment
Vonk, R., Szalowska, E., Dijkstra, M. L., Weening, D., de Vries, M., Roelofsen, H., Bruinenberg, M., Hoek, A., Elferink, M. & Groothuis, G., Jul-2011, In: Diabetes. 60, Supplement 1A, p. LB26-LB26 1 p.Research output: Contribution to journal › Meeting Abstract › Academic
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2010
Human Plasma Very Low Density Lipoprotein Carries Indian Hedgehog
Queiroz, K. C. S., Tio, R. A., Zeebregts, C. J., Bijlsma, M. F., Zijlstra, F., Badlou, B., de Vries, M., Ferreira, C. V., Spek, C. A., Peppelenbosch, M. P. & Rezaee, F., Nov-2010, In: Journal of Proteome Research. 9, 11, p. 6052-6059 8 p.Research output: Contribution to journal › Article › Academic › peer-review
43 Citations (Scopus) -
Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor
Kol, S., Merlo, M. E., Scheltema, R. A., de Vries, M., Vonk, R. J., Kikkert, N. A., Dijkhuizen, L., Breitling, R. & Takano, E., Apr-2010, In: Applied and environmental microbiology. 76, 8, p. 2574-2581 8 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile81 Citations (Scopus)565 Downloads (Pure) -
2009
Analysis of two additional signaling molecules in Streptomyces coelicolor and the development of a butyrolactone-specific reporter system
Hsiao, N.-H., Nakayama, S., Merlo, M. E., de Vries, M., Bunet, R., Kitani, S., Nihira, T. & Takano, E., 25-Sept-2009, In: Chemistry & Biology. 16, 9, p. 951-960 10 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile63 Citations (Scopus)717 Downloads (Pure) -
Comparison of Isotope-labeled Amino Acid Incorporation Rates (CILAIR) Provides a Quantitative Method to Study Tissue Secretomes
Roelofsen, J., Dijkstra, M., Weening, D., de Vries, M., Hoek, A. & Vonk, R. J., Feb-2009, In: Molecular & Cellular Proteomics. 8, 2, p. 316-324 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile41 Citations (Scopus)234 Downloads (Pure) -
Influence of clotting time on the protein composition of serum samples based on LC-MS data
Govorukhina, N. I., de Vries, M., Reijmers, T. H., Horvatovich, P., van der Zee, A. G. J. & Bischoff, R., 1-May-2009, In: Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences. 877, 13, p. 1281-1291 11 p.Research output: Contribution to journal › Article › Academic › peer-review
22 Citations (Scopus) -
2008
Proteomics analysis of Hodgkin lymphoma: identification of new players involved in the cross-talk between HRS cells and infiltrating lymphocytes
Ma, Y., Visser, L., Roelofsen, J., de Vries, M., Diepstra, A., van Imhoff, G., van der Wal, T., Luinge, M., Alvarez Llamas, G., Vos, H., Poppema, S., Vonk, R. & van den Berg, A., 15-Feb-2008, In: Blood. 111, 4, p. 2339-2346 8 p.Research output: Contribution to journal › Article › Academic › peer-review
109 Citations (Scopus) -
Sample Stability and Protein Composition of Saliva: Implications for Its Use as a Diagnostic Fluid
Esser, D., Alvarez-Llamas, G., de Vries, M. P., Weening, D., Vonk, R. J. & Roelofsen, H., 1-Feb-2008, In: Biomarker insights. 3, p. 25-27 3 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile74 Citations (Scopus)392 Downloads (Pure) -
2007
Analyses of intricate kinetics of the serum proteome during and after colon surgery by protein expression time series
Roelofsen, J., Alvarez Llamas, G., Dijkstra, M., Breitling, R., Havenga, K., Bijzet, J., Zandbergen, W., de Vries, M., Ploeg, R. J. & Vonk, R. J., Sept-2007, In: Proteomics. 7, 17, p. 3219-3228 10 p.Research output: Contribution to journal › Article › Academic › peer-review
13 Citations (Scopus) -
Characterization of the human visceral adipose tissue secretome
Alvarez Llamas, G., Szalowska, E., de Vries, M. P., Weening, D., Landman, K., Hoek, A., Wolffenbuttel, B. H. R., Roelofsen, J. & Vonk, R. J., Apr-2007, In: Molecular & Cellular Proteomics. 6, 4, p. 589-600 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile189 Citations (Scopus)323 Downloads (Pure) -
Differential analysis of protein expression of Bifidobacterium grown on different carbohydrates
He, T., Roelofsen, H., Alvarez-Llamas, G., de Vries, M., Venema, K., Welling, G. W. & Vonk, R. J., May-2007, In: Journal of microbiological methods. 69, 2, p. 364-370 7 p.Research output: Contribution to journal › Article › Academic › peer-review
9 Citations (Scopus) -
2006
Purification of decorin core protein from human lung tissue
Didraga, M., Barroso, B., de Vries, M., Kerstjens, H., Postma, D. & Bischoff, R., 11-Aug-2006, In: Journal of Chromatography A. 1123, 2, p. 151-159 9 p.Research output: Contribution to journal › Article › Academic › peer-review
4 Citations (Scopus) -
2002
Glottal flow through a two-mass model: Comparison of Navier-Stokes solutions with simplified models
de Vries, M., Schutte, H., Veldman, A. & Verkerke, G., Apr-2002, In: Journal of the Acoustical Society of America. 111, 4, p. 1847-1853 7 p.Research output: Contribution to journal › Article › Academic › peer-review
53 Citations (Scopus) -
2001
Matrix-assisted laser desorption/ionization quadrupole Time-of-Flight Mass Spectrometry: An elegant tool for peptidomics
Verhaert, P., Uttenweiler-Joseph, S., de Vries, M., Loboda, A., Ens, W. & Standing, K., Jan-2001, In: Proteomics. 1, 1, p. 118-131 14 p.Research output: Contribution to journal › Article › Academic › peer-review
113 Citations (Scopus) -
1992
Fast atom bombardment mass spectrometry of sulphated metabolites of the steroid org OD 14 using a glycerol matrix saturated with tetramethylammonium hydroxide
Jacobs, P. L., Schmeits, G. J., De Vries, M. P., Delbressine, L. P., Peters, H. A. & de Vries, M., 1992, In: Biological mass spectrometry. 21, 10, p. 491-499 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access2 Citations (Scopus) -
Fragmentations and rearrangements of metastable [C2H5OS]+ ions
de Vries, M., Oudman, D. & Weringa, W., Oct-1992, In: Organic mass spectrometry. 27, 10, p. 1131-1133 3 p.Research output: Contribution to journal › Article › Academic › peer-review
2 Citations (Scopus)