Research output per year
Research output per year
Short version
My research aims to better understand the processes of adaptation and speciation using population genetics. I use computational approaches and genomic data to test hypotheses about how natural populations evolve.
Longer version
I am interested in how natural populations evolve and adapt at the genomic level. I am particularly interested in the process of adaptation and speciation, through which clusters of individual genotypes become distinct and persist over time. This is the fundamental process that underlies the evolution and diversification of life.
How, when, and why did distinct populations or species split? What are the evolutionary footprints left in their genomes? What is the role of natural selection in shaping the diversity of natural populations and species? When sexual species hybridize and share genetic material, why don't they eventually collapse into a single species? What are the consequences of the exchanges of genetic material between species, and how often is this process beneficial? These are some of the questions I work on.
I have been working on a broad range of organisms during my career, from marine mammals to plant pathogens, and mosquitoes. Since 2012, my interest has focused increasingly towards the diverse and highly adaptable Anopheles mosquitoes, well known for being vectors of the deadly Plasmodium parasites responsible of malaria. Most anopheles species are complex of closely related species with races with distinct ecology ("ecotypes") that hybridize in the wild.
My overall goal is to improve our understanding of speciation and adaptation by testing hypotheses about the mechanics of these processes. By better understanding the pattern of diversity, introgression, and adaptation, my work also contributes to design and assess the feasibility and impacts of new vector control strategies. I use genome sequencing of natural populations combined with both descriptive and model-based computational approaches, most of which are rooted in population-genetic theory. I am interested in developing creative ways of working with genomic data, so that we can get the most out of this tremendous resource.
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Recommender for PCI Evol Biol (https://evolbiol.peercommunityin.org)
2017 → …
Member of the data analyses team of the MalariaGEN Ag1000 consortium (Sanger Institute)
2015 → …
Research output: Contribution to journal › Article › Academic › peer-review
Research output: Contribution to journal › Article › Academic › peer-review
Research output: Contribution to journal › Article › Academic › peer-review
Research output: Contribution to journal › Article › Academic › peer-review
Research output: Contribution to journal › Article › Academic › peer-review
Etienne, R. (PI), van Doorn, S. (PI), Fontaine, M. (PI) & Scherrer, R. (PhD student)
01/11/2017 → 01/02/2024
Project: Research
Wertheim, B. (PI), Fontaine, M. (PI), van Doorn, S. (PI) & Amaya Romero, J. E. (PI)
01/09/2017 → 01/06/2023
Project: Research
Beukeboom, L. (PI), Falcao Salles, J. (PI), Fontaine, M. (PI) & Brinker, P. (PhD student)
01/02/2017 → 01/11/2022
Project: Research
Eriksson, B. K. (PI), Maan, M. (PI), Fontaine, M. (PI) & Yanos, C. (PhD student)
01/02/2017 → 01/01/2022
Project: Research
Wertheim, B. (PI), Fontaine, M. (PI), van Doorn, S. (PI) & Hoitinga, P. (PhD student)
01/01/2017 → 01/04/2023
Project: Research
Fontaine, M. (Advisor)
Activity: External assignment (consultancy, appointment, outreach) › Consultancy › Professional
Fontaine, M. (Speaker), Ben Chehida, Y. (Contributor), Aguilar, A. (Contributor), Borrell, A. (Contributor), Ferreira, M. (Contributor), Taylor, B. (Contributor), Rojas-Bracho, L. (Contributor), Robertson, K. (Contributor), Thumloup, J. (Contributor), Schumacher, C. (Contributor), Harkins, T. (Contributor), Víkingsson, G. (Contributor), Weyna, A. (Contributor), Romiguier, J. (Contributor), Sabot, F. (Contributor) & Morin, P. (Contributor)
Activity: Talk and presentation › Academic presentation › Academic
Conklin, J. (Speaker), Verkuil, Y. (Contributor), Piersma, T. (Contributor) & Fontaine, M. (Contributor)
Activity: Talk and presentation › Academic presentation › Academic
Stelwagen, T. (Speaker), Ben Chehida, Y. (Speaker), Thumloup, J. (Speaker), Ferreira, M. (Speaker) & Fontaine, M. C. (Speaker)
Activity: Talk and presentation › Academic presentation › Academic
Fontaine, M. (Invited speaker)
Activity: Talk and presentation › Professional or public presentation › Professional
Amaya Romero, J. E. (Contributor), Chenal, C. (Creator), Ben Chehida, Y. (Creator), Miles, A. J. (Creator), Clarkson, C. S. (Creator), Pedergnana, V. (Creator), Wertheim, B. (Creator) & Fontaine, M. C. (Creator), DataSuds, 5-Aug-2024
DOI: 10.23708/wiajdn
Dataset
Fontaine, M. C. (Contributor), Thatcher, O. (Contributor), Ray, N. (Contributor), Piry, S. (Contributor), Brownlow, A. (Contributor), Davison, N. J. (Contributor), Jepson, P. (Contributor), Deaville, R. (Contributor) & Goodman, S. J. (Contributor), University of Groningen, 2-Feb-2017
DOI: 10.5061/dryad.k4p46, https://zenodo.org/record/4944096
Dataset
Cosme, L. V. (Creator), Corley, M. K. (Creator), Johnson, T. J. (Creator), Severson, D. W. (Creator), Yan, G. (Creator), Wang, X. (Creator), Beebe, N. W. (Creator), Maynard, A. J. (Creator), Bonizzoni, M. (Creator), Khorramnejad, A. (Creator), Martins, A. J. (Creator), Lima, J. B. P. (Creator), Munstermann, L. E. (Creator), Surendran, S. N. (Creator), Chen, C. (Creator), Maringer, K. (Creator), Wahid, I. (Creator), Mukherjee, S. (Creator), Xu, J. (Creator), Fontaine, M. (Creator), Estallo, E. L. (Creator), Stein, M. (Creator), Livdahl, T. P. (Creator), Scaraffia, P. Y. (Creator), Carter, B. H. (Creator), Mogi, M. (Creator), Tuno, N. (Creator), Mains, J. W. (Creator), Medley, K. A. (Creator), Bowles, D. E. (Creator), Gill, R. J. (Creator), Eritja, R. (Creator), González-Obando, R. (Creator), Trang, H. T. T. (Creator), Boyer, S. (Creator), Abunyewa, A. M. (Creator), Hackett, K. (Creator), Wu, T. (Creator), Nguyễn, J. (Creator), Shen, J. (Creator), Zhao, H. (Creator), Crawford, J. E. (Creator), Armbruster, P. A. (Creator) & Caccone, A. (Creator), figshare, 15-Aug-2024
DOI: 10.6084/m9.figshare.26688437.v1
Dataset
Cosme, L. V. (Creator), Corley, M. K. (Creator), Johnson, T. J. (Creator), Severson, D. W. (Creator), Yan, G. (Creator), Wang, X. (Creator), Beebe, N. W. (Creator), Maynard, A. J. (Creator), Bonizzoni, M. (Creator), Khorramnejad, A. (Creator), Martins, A. J. (Creator), Lima, J. B. P. (Creator), Munstermann, L. E. (Creator), Surendran, S. N. (Creator), Chen, C. (Creator), Maringer, K. (Creator), Wahid, I. (Creator), Mukherjee, S. (Creator), Xu, J. (Creator), Fontaine, M. (Creator), Estallo, E. L. (Creator), Stein, M. (Creator), Livdahl, T. P. (Creator), Scaraffia, P. Y. (Creator), Carter, B. H. (Creator), Mogi, M. (Creator), Tuno, N. (Creator), Mains, J. W. (Creator), Medley, K. A. (Creator), Bowles, D. E. (Creator), Gill, R. J. (Creator), Eritja, R. (Creator), González-Obando, R. (Creator), Trang, H. T. T. (Creator), Boyer, S. (Creator), Abunyewa, A. M. (Creator), Hackett, K. (Creator), Wu, T. (Creator), Nguyễn, J. (Creator), Shen, J. (Creator), Zhao, H. (Creator), Crawford, J. E. (Creator), Armbruster, P. A. (Creator) & Caccone, A. (Creator), figshare, 15-Aug-2024
DOI: 10.6084/m9.figshare.26688443.v1
Dataset
Cosme, L. V. (Creator), Corley, M. K. (Creator), Johnson, T. J. (Creator), Severson, D. W. (Creator), Yan, G. (Creator), Wang, X. (Creator), Beebe, N. W. (Creator), Maynard, A. J. (Creator), Bonizzoni, M. (Creator), Khorramnejad, A. (Creator), Martins, A. J. (Creator), Lima, J. B. P. (Creator), Munstermann, L. E. (Creator), Surendran, S. N. (Creator), Chen, C. (Creator), Maringer, K. (Creator), Wahid, I. (Creator), Mukherjee, S. (Creator), Xu, J. (Creator), Fontaine, M. (Creator), Estallo, E. L. (Creator), Stein, M. (Creator), Livdahl, T. P. (Creator), Scaraffia, P. Y. (Creator), Carter, B. H. (Creator), Mogi, M. (Creator), Tuno, N. (Creator), Mains, J. W. (Creator), Medley, K. A. (Creator), Bowles, D. E. (Creator), Gill, R. J. (Creator), Eritja, R. (Creator), González-Obando, R. (Creator), Trang, H. T. T. (Creator), Boyer, S. (Creator), Abunyewa, A. M. (Creator), Hackett, K. (Creator), Wu, T. (Creator), Nguyễn, J. (Creator), Shen, J. (Creator), Zhao, H. (Creator), Crawford, J. E. (Creator), Armbruster, P. A. (Creator) & Caccone, A. (Creator), figshare, 15-Aug-2024
DOI: 10.6084/m9.figshare.26688458.v1
Dataset
29/10/2021
1 item of Media coverage
Press/Media: Research › Academic
29/11/2017
7 items of Media coverage
Press/Media: Research › Academic
29/11/2016
1 item of Media coverage
Press/Media: Research › Academic
30/03/2015
1 item of Media coverage
Press/Media: Research › Academic
19/11/2012 → 22/11/2012
2 items of Media coverage
Press/Media: Research › Academic