Monika Fliss

2024

Genetic Determinants in MRSA Carriage and Their Association with Decolonization Outcome

Westgeest, A. C., Schippers, E. F., Rosema, S., Fliss, M. A., Kuijper, E. J., Zwittink, R. D., Lokate, M., Wouthuyzen-Bakker, M., Lambregts, M. M. C. & Bathoorn, E., Feb-2024, In: Current Microbiology. 81, 2, 10 p., 63.

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2 Citations (Scopus)

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Molecular epidemiology of a Parainfluenza Type 3 virus outbreak: Informing infection control measures on adult hematology wards

Hughes, L., Gard, L., Fliss, M., Bakker, M., Hazenberg, C., Zhou, X., Vierdag, P., von Eije, K., Voss, A., Lokate, M. & Knoester, M., Jun-2024, In: Journal of Clinical Virology. 172, 6 p., 105677.

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Uncovering the spread of drug-resistant bacteria through next-generation sequencing based surveillance: transmission of extended-spectrum β-lactamase-producing Enterobacterales by a contaminated duodenoscope

Cimen, C., Bathoorn, E., Loeve, A. J., Fliss, M., Berends, M. S., Nagengast, W. B., Hamprecht, A., Voss, A. & Lokate, M., 8-Mar-2024, In: Antimicrobial Resistance and Infection Control. 13, 1, 11 p., 31.

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1 Citation (Scopus)

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2023

Elevated risk of infection with SARS-CoV-2 Beta, Gamma, and Delta variants compared with Alpha variant in vaccinated individuals

RIVM COVID-19 Molecular epidemiology group, SeqNeth Molecular surveillance group, Andeweg, S. P., Vennema, H., Veldhuijzen, I., Smorenburg, N., Schmitz, D., Zwagemaker, F., Van Gageldonk-Lafeber, A. B., Hahne, S. J. M., Reusken, C., Knol, M. J. & Eggink, D., 22-Feb-2023, In: Science Translational Medicine. 15, 684, 8 p., eabn4338.

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22 Citations (Scopus)

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2022

Brief report: community-acquired Friedlander’s pneumonia and pulmonary metastatic Klebsiella pneumoniae infection caused by hypervirulent ST23 in the Netherlands

Fliss, M., van den Berg, C. H. S. B., Kuijper, E., Notermans, D. W., Hendrickx, A. P. A., Schoots, M. H. & Bathoorn, E., Aug-2022, In: European Journal of Clinical Microbiology and Infectious Diseases. 41, p. 1133-1138 6 p.

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5 Citations (Scopus)

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Validation and verification of the GeneFinder (TM) COVID-19 Plus RealAmp kit on the ELITe InGenius (R) instrument

Gard, L., Fliss, M. A., Bosma, F., Ter Veen, D. & Niesters, H. G. M., Feb-2022, In: Journal of virological methods. 300, 5 p., 114378.

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5 Citations (Scopus)

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2021

Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

Lisotto, P., Raangs, E. C., Couto, N., Rosema, S., Lokate, M., Zhou, X., Friedrich, A. W., Rossen, J. W. A., Harmsen, H. J. M., Bathoorn, E. & Chlebowicz-Fliss, M. A., 23-Oct-2021, In: BMC Genomics. 22, 1, 9 p., 758.

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6 Citations (Scopus)

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Misidentification of meticillin-resistant Staphylococcus aureus by the Cepheid Xpert MRSA NxG assay, the Netherlands, February to March 2021

Sabat, A. J., Bathoorn, E., Chlebowicz-Fliss, M. A., Akkerboom, V., Kamphuis, I., Dos Santos, C. O. & Friedrich, A. W., 16-Sept-2021, In: Eurosurveillance. 26, 37, 6 p., 2100800.

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4 Citations (Scopus)

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Molecular Characterisation of Vancomycin-Resistant Enterococcus faecium Isolates Belonging to the Lineage ST117/CT24 Causing Hospital Outbreaks

Lisotto, P., Couto, N., Rosema, S., Lokate, M., Zhou, X., Bathoorn, E., Harmsen, H. J. M., Friedrich, A. W., Rossen, J. W. A. & Chlebowicz-Fliss, M. A., 27-Sept-2021, In: Frontiers in Microbiology. 12, 12 p., 728356.

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8 Citations (Scopus)

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Whole-genome sequencing analysis reveals the spread of a vanB-carrying transposon among different vancomycin-resistant Enterococcus faecium clinical isolates in a non-endemic setting

Nijhuis, R. H. T., Chlebowicz-Fliss, M. A., Smilde, A. E., Rossen, J. W. A., Weersink, A. J. L. & Gigengack-Baars, A. C. M., Apr-2021, In: Journal of Hospital Infection. 110, p. 52-59 8 p.

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2 Citations (Scopus)

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2020

Characterization of fosfomycin heteroresistance among multidrug-resistant Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil

Campos, A. C. C., Andrade, N. L., Couto, N., Mutters, N. T., de Vos, M., Rosa, A. C. P., Damasco, P. V., Foe, J. R. L. T., Friedrich, A. W., Flissikowska, M. A.C. & Rossen, J. W. A., Sept-2020, In: Journal of Global Antimicrobial Resistance. 22, p. 584-593 10 p.

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8 Citations (Scopus)

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Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain

Miro, E., Rossen, J. W. A., Chlebowicz, M. A., Harmsen, D., Brisse, S., Passet, V., Navarro, F., Friedrich, A. W. & Garcia-Cobos, S., 31-Jan-2020, In: Frontiers in Microbiology. 10, 15 p., 2961.

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36 Citations (Scopus)

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Exoproteomic profiling uncovers critical determinants for virulence of livestock-associated and human-originated Staphylococcus aureus ST398 strains

Zhao, X., Chlebowicz-Flissikowska, M. A., Wang, M., Vera Murguia, E., de Jong, A., Becher, D., Maaß, S., Buist, G. & van Dijl, J. M., Dec-2020, In: Virulence. 11, 1, p. 947-963 17 p.

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12 Citations (Scopus)

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Toilet drain water as a potential source of hospital room-to-room transmission of carbapenemase-producing Klebsiella pneumoniae

Heireman, L., Hamerlinck, H., Vandendriessche, S., Boelens, J., Coorevits, L., De Brabandere, E., De Waegemaeker, P., Verhofstede, S., Claus, K., Chlebowicz-Flissikowska, M. A., Rossen, J. W. A., Verhasselt, B. & Leroux-Roels, I., Oct-2020, In: Journal of Hospital Infection. 106, 2, p. 232-239 8 p.

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11 Citations (Scopus)

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Virulence and resistance properties of E. coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil - The role of mobile genetic elements

SOLIDNESS Working Group, da Cruz Campos, A. C., Couto, N., Lucas da Silva Andrade, N., Friedrich, A. W., de Paula Rosa, A. C., Vieira Damasco, P., Chlebowicz-Fliss, M. A. & Rossen, J. W. A., Dec-2020, In: International journal of medical microbiology. 310, 8, 13 p., 151453.

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6 Citations (Scopus)

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Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates

Benulič, K., Pirš, M., Couto, N., Chlebowicz, M., Rossen, J. W. A., Zorec, T. M., Seme, K., Poljak, M., Lejko Zupanc, T., Ružić-Sabljić, E. & Cerar, T., 13-Apr-2020, In: PLoS ONE. 15, 4, p. e0231503 14 p., 0231503.

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14 Citations (Scopus)

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2019

Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages

da Cruz Campos, A. C., Cavallo, F. M., L Andrade, N., van Dijl, J. M., Couto, N., Zrimec, J., Lo Ten Foe, J. R., P Rosa, A. C., V Damasco, P., Friedrich, A. W., Chlebowicz-Flissikowska, M. A. & Rossen, J. W. A., 6-Nov-2019, In: Microorganisms. 7, 11, 15 p., 534.

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8 Citations (Scopus)

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Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae

Giordano, C., Klak, A., Barnini, S., Chlebowicz, M. A., Menconi, M., Rossen, J. W., Friedrich, A. W. & Bathoorn, E., 6-Nov-2019, In: mSphere. 4, 6, 10 p., ARTN e00551-19.

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5 Citations (Scopus)

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Revealing the Virulence Potential o f Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing

Puertolas-Balint, F., Rossen, J. W. A., dos Santos, C. O., Chlebowicz, M. M. A., Raangs, E. C., van Putten, M. L., Sola-Campoy, P. J., Han, L., Schmidt, M. & Garcia-Cobos, S., 4-Sept-2019, In: Frontiers in Microbiology. 10, 12 p., 1970.

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17 Citations (Scopus)

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2018

Antibiotic resistance plasmids cointegrated into a megaplasmid harbouring the blaOXA-427 carbapenemase gene

Desmet, S., Nepal, S., van Dijl, J. M., Van Ranst, M., Chlebowicz, M. A., Rossen, J. W., Van Houdt, J. K. J., Maes, P., Lagrou, K. & Bathoorn, E., Mar-2018, In: Antimicrobial Agents and Chemotherapy. 62, 3, e01448-17.

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18 Citations (Scopus)

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Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics

Couto, N., Chlebowicz, M. A., Raangs, E. C., Friedrich, A. W. & Rossen, J. W., 5-Apr-2018, In: Genome Announcements. 6, 14, 2 p., e00036-18.

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2 Citations (Scopus)

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Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil

Campos, A. C. C., Andrade, N. L., Ferdous, M., Chlebowicz, M. A., Santos, C. C., Correal, J. C. D., Lo Ten Foe, J. R., Rosa, A. C. P., Damasco, P. V., Friedrich, A. W. & Rossen, J. W. A., 16-Feb-2018, In: Frontiers in Microbiology. 9, p. 243 12 p., 243.

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35 Citations (Scopus)

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Conserved Citrullinating Exoenzymes in Porphyromonas Species

Gabarrini, G., Chlebowicz, M. A., Vega Quiroz, M. E., Veloo, A. C. M., Rossen, J. W. A., Harmsen, H. J. M., Laine, M. L., van Dijl, J. M. & van Winkelhoff, A. J., May-2018, In: Journal of Dental Research. 97, 5, p. 556-562 7 p.

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19 Citations (Scopus)

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Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

Couto, N., Schuele, L., Raangs, E. C., Machado, M. P., Mendes, C. I., Jesus, T. F., Chlebowicz, M., Rosema, S., Ramirez, M., Carriço, J. A., Autenrieth, I. B., Friedrich, A. W., Peter, S. & Rossen, J. W., 13-Sept-2018, In: Scientific Reports. 8, 1, 13 p., 13767.

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47 Citations (Scopus)

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Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements

Zhou, X., Chlebowicz, M. A., Bathoorn, E., Rosema, S., Couto, N., Lokate, M., Arends, J. P., Friedrich, A. W. & Rossen, J. W. A., Dec-2018, In: Journal of Antimicrobial Chemotherapy. 73, 12, p. 3259-3267 9 p.

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25 Citations (Scopus)

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Expansion of KPC-producing klebsiella pneumoniae with various mgrB-mutations giving rise to colistin-resistance: the role of ISL3 on plasmids

Giordano, C., Barnini, S., Tsioutis, C., Chlebowicz, M. A., Scoulica, E. V., Gikas, A., Rossen, J. W., Friedrich, A. W. & Bathoorn, E., Feb-2018, In: International journal of antimicrobial agents. 51, 2, p. 260-265 6 p.

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35 Citations (Scopus)

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From the wound to the bench: exoproteome interplay between wound-colonizing Staphylococcus aureus strains and co-existing bacteria

García-Pérez, A. N., de Jong, A., Junker, S., Becher, D., Chlebowicz, M. A., Duipmans, J. C., Jonkman, M. F. & van Dijl, J. M., 2018, In: Virulence. 9, 1, p. 363-378 16 p.

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56 Citations (Scopus)

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Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter

Veloo, A. C. M., Chlebowicz, M., Winter, H. L. J., Bathoorn, D. & Rossen, J. W. A., Oct-2018, In: Journal of Antimicrobial Chemotherapy. 73, 10, p. 2687-2690 4 p.

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23 Citations (Scopus)

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2017

Application of next generation sequencing in clinical microbiology and infection prevention

Deurenberg, R. H., Bathoorn, E., Chlebowicz, M. A., Couto, N., Ferdous, M., Garcia-Cobos, S., Kooistra-Smid, A. M. D., Raangs, E. C., Rosema, S., Veloo, A. C. M., Zhou, K., Friedrich, A. W. & Rossen, J. W. A., 10-Feb-2017, In: Journal of Biotechnology. 243, p. 16-24 9 p.

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377 Citations (Scopus)

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Reprint of "Application of next generation sequencing in clinical microbiology and infection prevention"

Deurenberg, R. H., Bathoorn, E., Chlebowicz, M. A., Monge Gomes do Couto, N., Ferdous, M., Garcia-Cobos, S., Kooistra-Smid, A. M. D., Raangs, E. C., Rosema, S., Veloo, A. C. M., Zhou, K., Friedrich, A. W. & Rossen, J. W. A., 20-May-2017, In: Journal of Biotechnology. 250, p. 2-10 9 p.

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13 Citations (Scopus)

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Virulence and antimicrobial resistance of Staphylococcus aureus isolated from bloodstream infections and pneumonia in Southern Poland

Pomorska-Wesolowska, M., Chmielarczyk, A., Chlebowicz, M., Ziolkowski, G., Szczypta, A., Natkaniec, J., Romaniszyn, D., Pobiega, M., Dzikowska, M., Krawczyk, L., Koziol, J. & Wojkowska-Mach, J., Dec-2017, In: Journal of Global Antimicrobial Resistance. 11, p. 100-104 5 p.

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11 Citations (Scopus)

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Virulence potential of Staphylococcus aureus isolates from Buruli ulcer patients

Amissah, N. A., Chlebowicz, M. A., Ablordey, A., Tetteh, C. S., Prah, I., van der Werf, T. S., Friedrich, A. W., van Dijl, J. M., Stienstra, Y. & Rossen, J. W., Jun-2017, In: International journal of medical microbiology. 307, 4-5, p. 223-232 10 p.

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15 Citations (Scopus)

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2016

Genetic features of livestock-associated Staphylococcus aureus ST9 isolates from Chinese pigs that carry the lsa(E) gene for quinupristin/dalfopristin resistance

Yan, X., Li, Z., Chlebowicz, M. A., Tao, X., Ni, M., Hu, Y., Li, Z., Grundmann, H., Murray, S., Pascoe, B., Sheppard, S. K., Bo, X., van Dijl, J. M., Du, P., Zhang, M., You, Y., Yu, X., Meng, F., Wang, S. & Zhang, J., Dec-2016, In: International journal of medical microbiology. 306, 8, p. 722-729 8 p.

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20 Citations (Scopus)

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe

Aanensen, D. M., Feil, E. J., Holden, M. T. G., Dordel, J., Yeats, C. A., Fedosejev, A., Goater, R., Castillo-Ramírez, S., Corander, J., Colijn, C., Chlebowicz, M. A., Schouls, L., Heck, M., Pluister, G., Ruimy, R., Kahlmeter, G., Åhman, J., Matuschek, E., Friedrich, A. W. & Parkhill, J. & 4 others, Bentley, S. D., Spratt, B. G., Grundmann, H. & European SRL Working Group, 2016, In: mBio. 7, 3, 15 p., ARTN e00444-16.

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160 Citations (Scopus)

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2015

Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system

Hsu, L.-Y., Harris, S. R., Chlebowicz, M. A., Lindsay, J. A., Koh, T.-H., Krishnan, P., Tan, T.-Y., Hon, P.-Y., Grubb, W. B., Bentley, S. D., Parkhill, J., Peacock, S. J. & Holden, M. T. G., 23-Apr-2015, In: Genome Biology. 16, 13 p., 81.

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