Siewert Marrink

282 Article
11 Review article
10 Meeting Abstract
9 Chapter
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Computational prediction of ω-transaminase selectivity by deep learning analysis of molecular dynamics trajectories
Ramírez-Palacios, C. & Marrink, S. J., 12-Jan-2023, In: QRB Discovery. 4, 11 p., e1.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
File

7 Downloads (Pure)
Facilitating CG Simulations with MAD: The MArtini Database Server
Hilpert, C., Beranger, L., Souza, P. C. T., Vainikka, P. A., Nieto, V., Marrink, S. J., Monticelli, L. & Launay, G., 13-Feb-2023, In: Journal of chemical information and modeling. 63, 3, p. 702–710 9.
Research output: Contribution to journal › Article › Academic › peer-review

1 Citation (Scopus)
Martini 3 Coarse-Grained Model for Second-Generation Unidirectional Molecular Motors and Switches
Vainikka, P. & Marrink, S. J., Jan-2023, In: Journal of Chemical Theory and Computation. 19, p. 596-604 00796.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
File

11 Downloads (Pure)
Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling
Pezeshkian, W., Grünewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J. & Korkin, D., Apr-2023, In: Structure. 31, 4, p. 492-503 12 p., 202302006.
Research output: Contribution to journal › Article › Academic › peer-review
Molecular Basis of PIP2-dependent Conformational Switching of Phosphorylated CD44 in binding FERM
Ren, M., Zhao, L., Ma, Z., An, H., Marrink, S. J. & Sun, F., 22-May-2023, (E-pub ahead of print) In: Biophysical Journal. 21 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
File

1 Downloads (Pure)

4 Organising and contributing to an event
1 Professional or public presentation

61st International Conference on the BioScience of Lipids (ICBL)
Antoinette Killian (Organiser), Siewert Marrink (Organiser), Ronald Wanders (Organiser), Josef Melcr (Organiser), Joseph Lorent (Organiser) & Bernd Helms (Chair)
12-Oct-2021 → 15-Oct-2021
Activity: Organising and attending an event › Organising and contributing to an event › Academic
MARTINI WORKHOP 2021
Alex de Vries (Contributor) & Siewert Marrink (Contributor)
31-Aug-2021 → 3-Sept-2021
Activity: Organising and attending an event › Organising and contributing to an event › Academic
Webinar: Perspective on the Martini Force Field
Siewert Marrink (Speaker)
18-Apr-2018
Activity: Talk and presentation › Professional or public presentation › Professional
MARTINI WORKSHOP 2017
Alex de Vries (Contributor) & Siewert Marrink (Contributor)
21-Aug-2017 → 24-Aug-2017
Activity: Organising and attending an event › Organising and contributing to an event › Academic
MARTINI WORKSHOP
Alex de Vries (Contributor) & Siewert Marrink (Contributor)
24-Aug-2015 → 27-Aug-2015
Activity: Organising and attending an event › Organising and contributing to an event › Academic

A molecular view on the escape of lipoplexed DNA from the endosome (no trajectories)
Bruininks, B. (Contributor), Telles de Souza, P. (Contributor), Ingolffson, H. (Contributor) & Marrink, S. (Contributor), University of Groningen, 22-Apr-2020
DOI: 10.5061/dryad.fqz612jq4, https://zenodo.org/record/4941166
Dataset
Dataset: Hydrophobic Compounds Reshape Membrane Domains
Barnoud, J. (Creator), Rossi, G. (Creator), Marrink, S. (Creator) & Monticelli, L. (Creator), University of Groningen, 9-Oct-2014
DOI: 10.1371/journal.pcbi.1003873.t001, https://figshare.com/articles/_List_of_simulations_performed_/1198800 and one more link, https://figshare.com/collections/Hydrophobic_Compounds_Reshape_Membrane_Domains/2004200 (show fewer)
Dataset
Additional file 1: of Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
Price, C. (Contributor), Branco Dos Santos, F. (Contributor), Hesseling - Meinders, A. (Contributor), Uusitalo, J. (Contributor), Bachmann, H. (Contributor), Benavente, V. (Contributor), Goel, A. (Contributor), Berkhout, J. (Contributor), Bruggeman, F. J. (Contributor), Marrink, S. (Contributor), Montalban Lopez, M. (Contributor), de Jong, A. (Contributor), Kok, J. (Contributor), Molenaar, D. (Contributor), Poolman, B. (Contributor), Teusink, B. (Contributor) & Kuipers, O. (Contributor), figshare, 10-Jan-2019
DOI: 10.6084/m9.figshare.7576595
Dataset
Simulation Parameters for Two Cooperative Binding Sites Sensitize PI(4,5)P2 Recognition by the Tubby Domain
Thallmair, V. (Contributor), Schultz, L. (Contributor), Zhao, W. (Creator), Marrink, S. (Contributor), Oliver, D. (Contributor) & Thallmair, T. (Contributor), ZENODO, 27-May-2022
DOI: 10.5281/zenodo.6587156, https://zenodo.org/record/6587156
Dataset

KNAW benoemt Marrink en Rosmalen tot lid
Siewert Marrink
25/04/2023
1 item of Media coverage
Press/Media: Public Engagement Activities › Popular
KNAW appoints Marrink and Rosmalen as members
Siewert Marrink
25/04/2023
1 item of Media coverage
Press/Media: Public Engagement Activities › Popular
WPI-led team uncovers new details of SARS-COV-2 structure
Siewert Marrink
30/03/2023
1 item of Media coverage
Press/Media: Public Engagement Activities › Popular
New details of SARS-COV-2 structure - Computational modeling reveals finer view of particle's outer membrane, which could lead to more effective therapies and vaccines
Siewert Marrink
30/03/2023
1 item of Media coverage
Press/Media: Public Engagement Activities › Popular
Nieuwe bindingsplaats in celmembraan voor het ‘Tubby’ eiwit - Functieverlies speelt onder meer rol bij ziekten van netvlies en gehoor
Siewert Marrink
07/09/2022
1 item of Media coverage
Press/Media: Public Engagement Activities › Popular

KNAW lid - Elected Membership Royal Netherlands Academy of Arts and Sciences
Marrink, Siewert (Recipient), 25-Apr-2023
Prize: Election to learned society › Academic
ERC Advanced Grant
Marrink, Siewert (Recipient), 26-Apr-2022
Prize: Fellowship awarded competitively › Academic
University of Polytechnics of Bucharest awards Honorary Doctorate to Professor Siewert Jan Marrink
Marrink, Siewert (Recipient), 15-Jan-2020
Prize: Honorary degree › Academic

File
ERC Advanced Grant
Marrink, Siewert (Recipient), 2015
Prize: Fellowship awarded competitively › Academic

Siewert Marrink

Network

Dive into details

Computational prediction of ω-transaminase selectivity by deep learning analysis of molecular dynamics trajectories

Facilitating CG Simulations with MAD: The MArtini Database Server

Martini 3 Coarse-Grained Model for Second-Generation Unidirectional Molecular Motors and Switches

Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling

Molecular Basis of PIP2-dependent Conformational Switching of Phosphorylated CD44 in binding FERM

61st International Conference on the BioScience of Lipids (ICBL)

MARTINI WORKHOP 2021

Webinar: Perspective on the Martini Force Field

MARTINI WORKSHOP 2017

MARTINI WORKSHOP

A molecular view on the escape of lipoplexed DNA from the endosome (no trajectories)

Dataset: Hydrophobic Compounds Reshape Membrane Domains

Additional file 1: of Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

Simulation Parameters for Two Cooperative Binding Sites Sensitize PI(4,5)P2 Recognition by the Tubby Domain

KNAW benoemt Marrink en Rosmalen tot lid

KNAW appoints Marrink and Rosmalen as members

WPI-led team uncovers new details of SARS-COV-2 structure

New details of SARS-COV-2 structure - Computational modeling reveals finer view of particle's outer membrane, which could lead to more effective therapies and vaccines

Nieuwe bindingsplaats in celmembraan voor het ‘Tubby’ eiwit - Functieverlies speelt onder meer rol bij ziekten van netvlies en gehoor

KNAW lid - Elected Membership Royal Netherlands Academy of Arts and Sciences

ERC Advanced Grant

University of Polytechnics of Bucharest awards Honorary Doctorate to Professor Siewert Jan Marrink

ERC Advanced Grant

Siewert Marrink

Network

Research output

Activities

Datasets

Press/Media

Prizes