Research output per year
Research output per year
- 23 results
Search results
-
2024
Exploring the Predictive Value of Gut Microbiome Signatures for Therapy Intensification in Patients With Inflammatory Bowel Disease: A 10-Year Follow-up Study
Al Radi, Z. M. A., Prins, F. M., Collij, V., Vich Vila, A., Festen, E. A. M., Dijkstra, G., Weersma, R. K., Klaassen, M. A. Y. & Gacesa, R., Oct-2024, In: Inflammatory Bowel Diseases. 30, 10, p. 1642–1653 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)23 Downloads (Pure) -
Limited predictive value of the gut microbiome and metabolome for response to biological therapy in inflammatory bowel disease
Prins, F. M., Hidding, I. J., Klaassen, M. A. Y., Collij, V., Schultheiss, J. P. D., Uniken Venema, W. T. C., Bangma, A., Aardema, J. B., Jansen, B. H., Mares, W. G. N., Witteman, B. J. M., Festen, E. A. M., Dijkstra, G., Visschedijk, M. C., Fidder, H. H., Vich Vila, A., Oldenburg, B., Gacesa, R. & Weersma, R. K., 2024, In: Gut Microbes. 16, 1, 18 p., 2391505.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)43 Downloads (Pure) -
The gut microbiome across the cardiovascular risk spectrum
Prins, F. M., Collij, V., Groot, H. E., Björk, J. R., Swarte, J. C., Andreu-Sánchez, S., Jansen, B. H., Fu, J., Harmsen, H. J. M., Zhernakova, A., Lipsic, E., van der Harst, P., Weersma, R. K. & Gacesa, R., Jun-2024, In: European Journal of Preventive Cardiology. 31, 8, p. 935–944 26 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Citations (Scopus)59 Downloads (Pure) -
2023
Faecal metabolome and its determinants in inflammatory bowel disease
Vich Vila, A., Hu, S., Andreu-Sánchez, S., Collij, V., Jansen, B. H., Augustijn, H. E., Bolte, L. A., Ruigrok, R. A. A. A., Abu-Ali, G., Giallourakis, C., Schneider, J., Parkinson, J., Al-Garawi, A., Zhernakova, A., Gacesa, R., Fu, J. & Weersma, R. K., Aug-2023, In: Gut. 72, 8, p. 1472-1485 14 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile63 Citations (Scopus)158 Downloads (Pure) -
Gut feelings: the relations between depression, anxiety, psychotropic drugs and the gut microbiome
Brushett, S., Gacesa, R., Vila, A. V., Gois, M. F. B., Andreu-Sánchez, S., Swarte, J. C., Klaassen, M. A. Y., Collij, V., Sinha, T., Bolte, L. A., Wu, J., Swertz, M., Kroon, M. L. A. D., Reijneveld, S. A., Wijmenga, C., Weersma, R. K., Fu, J., Loo, H. M. V., Kurilshikov, A. & Zhernakova, A., 18-Dec-2023, In: Gut Microbes. 15, 2, 14 p., 2281360.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile10 Citations (Scopus)103 Downloads (Pure) -
2022
Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project
Lopera-Maya, E. A., Kurilshikov, A., van der Graaf, A., Hu, S., Lifelines Cohort Study, Andreu-Sánchez, S., Chen, L., Vila, A. V., Gacesa, R., Sinha, T., Collij, V., Klaassen, M. A. Y., Bolte, L. A., Brandao Gois, M. F., Neerincx, P. B. T., Swertz, M. A., Harmsen, H. J. M., Wijmenga, C., Fu, J. & Weersma, R. K. & 2 others, , Feb-2022, In: Nature genetics. 54, p. 143-151 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile238 Citations (Scopus)1432 Downloads (Pure) -
Environmental factors shaping the gut microbiome in a Dutch population
Gacesa, R., Kurilshikov, A., Vich Vila, A., Sinha, T., Klaassen, M. A. Y., Bolte, L. A., Andreu-Sánchez, S., Chen, L., Collij, V., Hu, S., Dekens, J. A. M., Lenters, V. C., Björk, J. R., Swarte, J. C., Swertz, M. A., Jansen, B. H., Gelderloos-Arends, J., Jankipersadsing, S., Hofker, M. & Vermeulen, R. C. H. & 6 others, , 2022, In: Nature. p. 732–739 25 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile380 Citations (Scopus)3127 Downloads (Pure) -
Gut microbiome dysbiosis is associated with increased mortality after solid organ transplantation
Swarte, J. C., Li, Y., Hu, S., Björk, J. R., Gacesa, R., Vich Vila, A., Douwes, R. M., Collij, V., Kurilshikov, A., Post, A., Klaassen, M. A. Y., Eisenga, M. F., Gomes-Neto, A. W., Kremer, D., Jansen, B. H., Knobbe, T. J., Berger, S. P., Sanders, J.-S. F., Heiner-Fokkema, M. R. & Porte, R. J. & 10 others, , 31-Aug-2022, In: Science Translational Medicine. 14, 660, 15 p., eabn7566.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile49 Citations (Scopus)539 Downloads (Pure) -
2021
A combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease
Gacesa, R., Vich Vila, A., Collij, V., Mujagic, Z., Kurilshikov, A., Voskuil, M. D., Festen, E. A. M., Wijmenga, C., Jonkers, D. M. A. E., Dijkstra, G., Fu, J., Zhernakova, A., Imhann, F. & Weersma, R. K., 2021, In: Gut Microbes. 13, 1, 18 p., 1943288.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile6 Citations (Scopus)136 Downloads (Pure) -
Gut microbiota in inflammatory bowel diseases: moving from basic science to clinical applications
Collij, V., Klaassen, M. A. Y., Weersma, R. K. & Vila, A. V., May-2021, In: HUMAN GENETICS. 140, 5, p. 703–708 6 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Citations (Scopus)95 Downloads (Pure) -
Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome
Bolte, L. A., Vich Vila, A., Imhann, F., Collij, V., Gacesa, R., Peters, V., Wijmenga, C., Kurilshikov, A., Campmans-Kuijpers, M. J. E., Fu, J., Dijkstra, G., Zhernakova, A. & Weersma, R. K., Jul-2021, In: Gut. 70, 7, p. 1287-1298 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile362 Citations (Scopus)272 Downloads (Pure) -
Patient attitudes towards faecal sampling for gut microbiome studies and clinical care reveal positive engagement and room for improvement
Bolte, L. A., Klaassen, M. A. Y., Collij, V., Vich Vila, A., Fu, J., van der Meulen, T. A., de Haan, J. J., Versteegen, G. J., Dotinga, A., Zhernakova, A., Wijmenga, C., Weersma, R. K. & Imhann, F., 8-Apr-2021, In: PLoS ONE. 16, 4, 13 p., e0249405.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile5 Citations (Scopus)171 Downloads (Pure) -
The composition and metabolic potential of the human small intestinal microbiota within the context of inflammatory bowel disease
Ruigrok, R. A. A. A., Collij, V., Sureda, P., Klaassen, M. A. Y., Bolte, L. A., Jansen, B. H., Voskuil, M. D., Fu, J., Wijmenga, C., Zhernakova, A., Weersma, R. K. & Vich Vila, A., Aug-2021, In: Journal of Crohn's and Colitis. 15, 8, p. 1326-1338 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile24 Citations (Scopus)109 Downloads (Pure) -
Whole exome sequencing analyses reveal gene-microbiota interactions in the context of IBD
Hu, S., Vich Vila, A., Gacesa, R., Collij, V., Stevens, C., Fu, J. M., Wong, I., Talkowski, M. E., Rivas, M. A., Imhann, F., Bolte, L., van Dullemen, H., Dijkstra, G., Visschedijk, M. C., Festen, E. A., Xavier, R. J., Fu, J., Daly, M. J., Wijmenga, C. & Zhernakova, A. & 2 others, , 1-Feb-2021, In: Gut. 70, 2, p. 285-296 12 p., 319706.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile43 Citations (Scopus)174 Downloads (Pure) -
2020
Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity
Chen, L., Collij, V., Jaeger, M., van den Munckhof, I. C. L., Vich Vila, A., Kurilshikov, A., Gacesa, R., Sinha, T., Oosting, M., Joosten, L. A. B., Rutten, J. H. W., Riksen, N. P., Xavier, R. J., Kuipers, F., Wijmenga, C., Zhernakova, A., Netea, M. G., Weersma, R. K. & Fu, J., 11-Aug-2020, In: Nature Communications. 11, 1, p. 4018 12 p., 4018.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile102 Citations (Scopus)271 Downloads (Pure) -
Impact of commonly used drugs on the composition and metabolic function of the gut microbiota
Vich Vila, A., Collij, V., Sanna, S., Sinha, T., Imhann, F., Bourgonje, A. R., Mujagic, Z., Jonkers, D. M. A. E., Masclee, A. A. M., Fu, J., Kurilshikov, A., Wijmenga, C., Zhernakova, A. & Weersma, R. K., 17-Jan-2020, In: Nature Communications. 11, 1, 11 p., 362.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile493 Citations (Scopus)351 Downloads (Pure) -
2019
Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles
Sinha, T., Vila, A. V., Garmaeva, S., Jankipersadsing, S. A., Imhann, F., Collij, V., Bonder, M. J., Jiang, X., Gurry, T., Alm, E. J., D'Amato, M., Weersma, R. K., Scherjon, S., Wijmenga, C., Fu, J., Kurilshikov, A. & Zhernakova, A., 2019, In: Gut Microbes. 10, 3, p. 358-366 9 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile146 Citations (Scopus)387 Downloads (Pure) -
Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn's Disease Exacerbations
Klaassen, M. A. Y., Imhann, F., Collij, V., Fu, J., Wijmenga, C., Zhernakova, A., Dijkstra, G., Festen, E. A. M., Gacesa, R., Vich Vila, A. & Weersma, R. K., Nov-2019, In: Journal of Crohn's and Colitis. 13, 11, p. 1439-1449 11 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile38 Citations (Scopus)68 Downloads (Pure) -
SLC39A8 missense variant is associated with Crohn's disease but does not have a major impact on gut microbiome composition in healthy subjects
Collij, V., Imhann, F., Vich Vila, A., Fu, J., Dijkstra, G., Festen, E. A. M., Voskuil, M. D., Daly, M. J., Xavier, R. J., Wijmenga, C., Zhernakova, A. & Weersma, R. K., 31-Jan-2019, In: PLoS ONE. 14, 1, 13 p., 0211328.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile10 Citations (Scopus)492 Downloads (Pure) -
The 1000IBD project: multi-omics data of 1000 inflammatory bowel disease patients; data release 1
Imhann, F., Van der Velde, K. J., Barbieri, R., Alberts, R., Voskuil, M. D., Vich Vila, A., Collij, V., Spekhorst, L. M., der Sloot Kwj, V., Peters, V., Van Dullemen, H. M., Visschedijk, M. C., Eam, F., Swertz, M. A., Dijkstra, G. & Weersma, R. K., 8-Jan-2019, In: Bmc gastroenterology. 19, 5, 10 p., 5.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile70 Citations (Scopus)486 Downloads (Pure) -
2018
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
Vich Vila, A., Imhann, F., Collij, V., Jankipersadsing, S. A., Gurry, T., Mujagic, Z., Kurilshikov, A., Bonder, M. J., Jiang, X., Tigchelaar, E. F., Dekens, J., Peters, V., Voskuil, M. D., Visschedijk, M. C., van Dullemen, H. M., Keszthelyi, D., Swertz, M. A., Franke, L., Alberts, R. & Festen, E. A. M. & 10 others, , 19-Dec-2018, In: Science Translational Medicine. 10, 472, 12 p., eaap8914.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile407 Citations (Scopus)80 Downloads (Pure) -
2016
Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci
Ellinghaus, D., Jostins, L., Spain, S. L., Cortes, A., Bethune, J., Han, B., Park, Y. R., Raychaudhuri, S., Pouget, J. G., Huebenthal, M., Folseraas, T., Wang, Y., Esko, T., Metspalu, A., Westra, H.-J., Franke, L., Pers, T. H., Weersma, R. K., Collij, V. & D'Amato, M. & 30 others, , May-2016, In: Nature Genetics. 48, 5, p. 510-518 9 p.Research output: Contribution to journal › Article › Academic › peer-review
585 Citations (Scopus) -
Drug Repositioning in Inflammatory Bowel Disease Based on Genetic Information
Collij, V., Festen, E. A. M., Alberts, R. & Weersma, R. K., Nov-2016, In: Inflammatory Bowel Diseases. 22, 11, p. 2562-2570 9 p.Research output: Contribution to journal › Article › Academic › peer-review
13 Citations (Scopus)