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  • 2022

    Evaluation of Marker Tracking Using Mono and Stereo Vision in Microsoft HoloLens for Surgical Navigation

    Thabit, A., Niessen, W., Wolvius, E. & van Walsum, T., 4-Apr-2022, Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • 2021

    Learning unbiased group-wise registration (LUGR) and joint segmentation: Evaluation on longitudinal diffusion MRI

    Li, B., Niessen, W., Klein, S., Ikram, A., Vernooij, M. & Bron, E., 15-Feb-2021, Medical Imaging 2021: Image Processing. SPIE

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • Projection-Wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis

    Liu, X., Li, B., Bron, E., Niessen, W., Wolvius, E. & Roshchupkin, G., 2021, Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 - 24th International Conference, Proceedings. Springer Science+Business Media, p. 814-823 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

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    3 Citations (Scopus)
    23 Downloads (Pure)
  • 2020

    Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks

    Dubost, F., Collery, B., Renaudier, A., Roc, A., Posocco, N., Niessen, W. & de Bruijne, M., 2020, Lecture Notes in Computer Science. Springer-Verlag, Vol. 11963 LNCS. p. 88-94 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    7 Citations (Scopus)
  • Computer Aided Diagnosis of Clinically Significant Prostate Cancer in Low-Risk Patients on Multi-Parametric MR Images Using Deep Learning

    Arif, M., Schoots, I., Castillo Tovar, J., Bouts, M., Niessen, W. & Veenland, J. F., 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI). Vol. 2020-April. p. 1482-1485 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    6 Citations (Scopus)
  • 2019

    Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network

    van Wijnen, K., Dubost, F., Yilmaz, P., Ikram, A., Niessen, W., Adams, H., Vernooij, M. & de Bruijne, M., 2019, International Conference on Medical Image Computing and Computer-Assisted Intervention : Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. Springer Nature, p. 234-242 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    12 Citations (Scopus)
  • Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI Across Sites

    Dubost, F., Dünnwald, M., Huff, D., Scheumann, V., Schreiber, F., Vernooij, M., Niessen, W., Skalej, M., Schreiber, S., Oeltze-Jafra, S. & de Bruijne, M., 2019, International Workshop on OR 2.0 Context-Aware Operating Theaters : International Workshop on Machine Learning in Clinical Neuroimaging : OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging. Springer Nature

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

  • Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    Venkatraghavan, V., Dubost, F., Bron, E., Niessen, W., de Bruijne, M. & Klein, S., 2019, INFORMATION PROCESSING IN MEDICAL IMAGING, IPMI 2019. Springer International Publishing AG, Vol. 11492. p. 169-180 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    4 Citations (Scopus)
  • Hydranet: Data Augmentation for Regression Neural Networks

    Dubost, F., Bortsova, G., Adams, H., Ikram, A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, International Conference on Medical Image Computing and Computer-Assisted Intervention : Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. Springer Nature, p. 438-446 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    8 Citations (Scopus)
  • 2017

    A discriminative event based model for alzheimer’s disease progression modeling

    Venkatraghavan, V., Bron, E., Niessen, W. & Klein, S., 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Springer Verlag/Kodansha Ltd, p. 121-133 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    14 Citations (Scopus)
  • GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network

    Dubost, F., Bortsova, G., Adams, H., Ikram, A., Niessen, W., Vernooij, M. & de Bruijne, M., 2017, Medical Image Computing and Computer-Assisted Intervention ? MICCAI 2017 : 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part III (Lecture Notes in Computer Science, vol. 10435). Springer-Verlag, p. 214-222 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    44 Citations (Scopus)
  • Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model

    Arkesteijn, GAM., Poot, D., Niestijl, M., Vernooij, M., Niessen, W., van Vliet, LM. & Vos, FM., 15-Jun-2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE computer society, p. 783-786 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

  • 2016

    Modeling the brain morphology distribution in the general aging population

    Huizinga, W., Poot, D., Roshchupkin, G., Bron, E., Ikram, A., Vernooij, M., Rueckert, D., Niessen, W. & Klein, S., 2016, Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • Total Correlation-Based Groupwise Image Registration for Quantitative MRI

    Guyader, J-M., Huizinga, W., Fortunati, V., Poot, D., Kranenburg, M., Veenland, J. F., Paulides, M., Niessen, W. & Klein, S., 16-Dec-2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE computer society, p. 626-633 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    6 Citations (Scopus)
  • 2015

    CSF contamination-invariant statistics in diffusion-weighted MRI

    Arkesteijn, GAM., Poot, D., de Groot, M., Vernooij, M., Niessen, W., van Vliet, LM. & Vos, FM., 21-Jul-2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE computer society, p. 454-457 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • 2014

    Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

    Guyader, J-M., Bernardin, L., Douglas, N. H. M., Poot, D., Niessen, W. & Klein, S., 2014, Medical Imaging 2014: Image Processing. SPIE

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    2 Citations (Scopus)
  • Non-rigid groupwise image registration for motion compensation in quantitative MRI

    Huizinga, W., Poot, D., Guyader, J-M., Smit, H., Kranenburg, M., van Geuns, R. J., Uitterdijk, A., van Beusekom, H., Coolen, B. F., Leemans, A., Niessen, W. & Klein, S., 2014, Biomedical Image Registration - 6th International Workshop, WBIR 2014, Proceedings. Springer Verlag/Kodansha Ltd, p. 184-193 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    6 Citations (Scopus)
  • Semi-automated quantification of fibrous cap thickness in intracoronary optical coherence tomography

    Zahnd, G., Karanasos, A., van Soest, G., Regar, E., Niessen, W., Gijsen, F. & van Walsum, T., 2014, Information Processing in Computer-Assisted Interventions - 5th International Conference, IPCAI 2014, Proceedings. Springer Verlag/Kodansha Ltd, p. 78-89 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    7 Citations (Scopus)
  • 2013

    Bias correction of maximum likelihood estimation in quantitative MRI

    Poot, D., Kotek, G., Niessen, W. & Klein, S., 2013, Medical Imaging 2013: Image Processing.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    1 Citation (Scopus)
  • Carotid artery lumen segmentation in 3D free-hand ultrasound images using surface graph cuts

    Arias Lorza, AM., Carvalho, D., Petersen, J., Dijk, A., van der Lugt, A., Niessen, W., Klein, S. & de Bruijne, M., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 2 ed. p. 542-549 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    14 Citations (Scopus)
  • Local appearance features for robust MRI brain structure segmentation across scanning protocols

    Achterberg, H., Poot, D., Lijn, F., Vernooij, M., Ikram, M. A., Niessen, W. & de Bruijne, M., 2013, Medical Imaging 2013: Image Processing.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • Super-resolution reconstruction using cross-scale self-similarity in multi-slice MRI

    Plenge, E., Poot, D., Niessen, W. & Meijering, E., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 3 ed. p. 123-130 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    32 Citations (Scopus)
  • 2012

    A computer aided detection system for cerebral microbleeds in brain MRI

    Ghafaryasl, B., Lijn, F., Poels, M., Vrooman, H., Ikram, M. A., Niessen, W., van der Lugt, A., Vernooij, M. & de Bruijne, M., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 138-141 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    29 Citations (Scopus)
  • Quantification of DCE-MRI: A validation of three techniques with 3D-histology

    Bol, K., Haeck, J., Alic, L., Niessen, W., Jong, M., Bernsen, M. & Veenland, J. F., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 1044-1047 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    1 Citation (Scopus)
  • Registration of free-hand ultrasound and MRI of carotid arteries through combination of point-based and intensity-based algorithms

    Carvalho, D., Klein, S., Akkus, Z., Kate, GL., Tang, H., Selwaness, M., Schinkel, A., Bosch, J., van der Lugt, A. & Niessen, W., 2012, Biomedical Image Registration - 5th International Workshop, WBIR 2012, Proceedings. p. 131-140 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • Super-resolution reconstruction in MRI: Better images faster?

    Plenge, E., Poot, D., Bernsen, M., Kotek, G., Houston, G., Wielopolski, P., van der Weerd, L., Niessen, W. & Meijering, E., 2012, Medical Imaging 2012: Image Processing.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    13 Citations (Scopus)
  • Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach

    Khmelinskii, A., Plenge, E., Kok, P., Dzyubachyk, O., Poot, D., Suidgeest, E., Botha, C. P., Niessen, W., van der Weerd, L., Meijering, E. & Lelieveldt, B. P. F., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 1723-1726 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    5 Citations (Scopus)
  • Supervised in-vivo plaque characterization incorporating class label uncertainty

    van Engelen, A., Niessen, W., Klein, S., Groen, H., Verhagen, H., Wentzel, J., van der Lugt, A. & de Bruijne, M., 12-Jul-2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 246-249 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    6 Citations (Scopus)
  • 2011

    Comparison of shape regression methods under landmark position uncertainty

    Baka, N., Metz, C., Schaap, M., Lelieveldt, BPF., Niessen, W. & de Bruijne, M., 2011, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2011: 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part II. Fichtinger, G., Martel, A. & Peters, T. (eds.). Springer, p. 434-441 7 p. (Lecture Notes in Computer Science; vol. 6892).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    8 Citations (Scopus)
  • Developing a tool for the validation of quantitative DCE-MRI

    Bol, K., Haeck, J. C., Alic, L., Bernsen, M., Jong, M., Niessen, W. & Veenland, J. F., 2011, Medical Imaging 2011: Biomedical Applications in Molecular, Structural, and Functional Imaging.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    2 Citations (Scopus)
  • Improved tissue segmentation by including an MR acquisition model

    Poot, D., de Bruijne, M., Vernooij, M., Ikram, M. A. & Niessen, W., 2011, Multimodal Brain Image Analysis - First International Workshop, MBIA 2011, Held in Conjunction with MICCAI 2011, Proceedings. p. 152-159 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    1 Citation (Scopus)
  • Plaque characterization in ex vivo MRI evaluated by dense 3D correspondence with histology

    van Engelen, A., de Bruijne, M., Klein, S., Verhagen, H., Groen, H., Wentzel, J., van der Lugt, A. & Niessen, W., 2011, Medical Imaging 2011: Computer-Aided Diagnosis.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    3 Citations (Scopus)
  • Transdimensional MCMC methods for fully automatic motion analysis in tagged MRI

    Smal, I., Carranza Herrezuelo, N., Klein, S., Niessen, W. & Meijering, E., 2011, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011 : 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part I. Fichtinger, G. (ed.). Springer, p. 573-580 7 p. (Lecture Notes in Computer Science; vol. 6891).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    3 Citations (Scopus)
  • 2010

    A semi-automatic method for segmentation of the carotid bifurcation and bifurcation angle quantification on black blood MRA

    Tang, H., Onkelen, R., van Walsum, T., Hameeteman, K., Schaap, M., Tori, F., Bouwhuijsen, Q., Witteman, JCM., van der Lugt, A., Vliet, LJ. & Niessen, W., 2010, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2010 : 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part III. Jiang, T. (ed.). Springer, p. 97-104 7 p. (Lecture Notes in Computer Science; vol. 6363).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    12 Citations (Scopus)
  • Conditional shape models for cardiac motion estimation

    Metz, C., Baka, N., Kirisli, H., Schaap, M., van Walsum, T., Klein, S., Neefjes, L., Mollet, N., Lelieveldt, BPF., de Bruijne, M. & Niessen, W., 2010, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2010 : 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part I. Jiang, T. (ed.). Springer, p. 452-459 7 p. (Lecture Notes in Computer Science; vol. 6361).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    11 Citations (Scopus)
  • Confidence of model based shape reconstruction from sparse data

    Baka, N., de Bruijne, M., Reiber, JHC., Niessen, W. & Lelieveldt, B. P. F., 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 1077-1080 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    11 Citations (Scopus)
  • Early diagnosis of dementia based on intersubject whole-brain dissimilarities

    Loog, M., Klein, S., Lijn, F., Heijer, T., Hammers, A., de Bruijne, M., van der Lugt, A., Duin, R., Breteler, M. & Niessen, W., 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 249-252 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    19 Citations (Scopus)
  • Multi-modal image registration: Matching MRI with histology

    Alic, L., Haeck, J., Klein, S., Bol, K., van Tiel, S., Wielopolski, P., Marchand, M. L., Niessen, W., Bernsen, M., Veenland, J. F. & Jong, M., 2010, Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    8 Citations (Scopus)
  • Prediction of dementia by hippocampal shape analysis

    Achterberg, H., Lijn, F., Heijer, T., van der Lugt, A., Breteler, M., Niessen, W. & de Bruijne, M., 2010, Machine Learning in Medical Imaging - First International Workshop, MLMI 2010, Held in Conjunction with MICCAI 2010, Proceedings. p. 42-49 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    7 Citations (Scopus)
  • Statistical analysis of structural brain connectivity

    Boer, R., Schaap, M., Lijn, F., Vrooman, H., de Groot, M., Vernooij, M., Ikram, A., van Velsen, E., van der Lugt, A., Breteler, M. & Niessen, W., 2010, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2010 : 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part II. Jiang, T. (ed.). Springer, p. 101-108 7 p. (Lecture Notes in Computer Science; vol. 6362).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    4 Citations (Scopus)
  • 2009

    Carotid artery segmentation and plaque quantification in CTA

    Vukadinovic, D., van Walsum, T., Rozie, S., Weert, T., Manniesing, R., van der Lugt, A. & Niessen, W., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 835-839 4 p. (IEEE International symposium on biomedical imaging: from nano to macro; vol. 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    10 Citations (Scopus)
  • Cerebellum segmentation in MRI using atlas registration and local multi-scale image descriptors

    Lijn, F., de Bruijne, M., Hoogendam, J., Klein, S., Hameeteman, K., Breteler, M. & Niessen, W., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 221-224 3 p. (IEEE International symposium on biomedical imaging: from nano to macro; vol. 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    22 Citations (Scopus)
  • Energy minimization methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy

    Dzyubachyk, O., van Cappellen, G., Essers, J., Niessen, W. & Meijering, E., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 1127-1130 3 p. (IEEE International symposium on biomedical imaging: from nano to macro; vol. 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    6 Citations (Scopus)
  • GPU accelerated alignment of 3-D CTA with 2-D X-ray data for improved guidance in coronary interventions

    Metz, C., Schaap, M., Klein, S., Weustink, A. C., Mollet, N., Schultz, C., van Geuns, R. J., Serruys, PWJC., van Walsum, T. & Niessen, W., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 959-962 3 p. (IEEE International symposium on biomedical imaging: from nano to macro; vol. 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    12 Citations (Scopus)
  • Integrating biological knowledge, novel imaging modalities, and modeling in breast cancer diagnosis

    Karssemeijer, N., Huisman, H., Hawkes, D., Hipwell, J., Bohler, T., Lesniak, J., Tanner, C., Szekely, G., Niessen, W. & Hahn, H., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 386-389 3 p. (IEEE International symposium on biomedical imaging: from nano to macro; vol. 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    2 Citations (Scopus)
  • Patient Specific 4D Coronary Models from ECG-gated CTA Data for Intra-operative Dynamic Alignment of CTA with X-ray Images

    Metz, C., Schaap, M., Klein, S., Neefjes, L., Capuano, E., Schultz, C., van Geuns, R. J., Serruys, PWJC., van Walsum, T. & Niessen, W., 2009, Medical Image Computing and Computer-Assisted Intervention (MICCAI 2009), Part I. Yang, G-Z., Hawkes, D., Rueckert, D., Noble, A. & Taylor, C. (eds.). Springer, p. 369-376 7 p. (Lecture Notes in Computer Science; vol. 5761).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    27 Citations (Scopus)
  • Quantitative comparison of spot detection methods in live-cell fluorescence microscopy imaging

    Smal, I., Loog, M., Niessen, W. & Meijering, E., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, p. 1178-1181 3 p. (IEEE International symposium on biomedical imaging: from nano to macro; vol. 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

    17 Citations (Scopus)