A comparison of visual and collection-based methods for assessing community structure of coral reef fishes in the tropical Eastern Pacific

Adriana Alzate*, Fernando A. Zapata, Alan Giraldo

*Corresponding author for this work

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15 Citations (Scopus)
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Gorgona Island, the major insular area in the Colombian Pacific Ocean, is characterized by a remarkably high biological and ecosystem diversity for this area of the world. Coral reefs are well developed and their fish communities have been described using conventional visual surveys. These methods, however, are known to be biased towards detecting larger and more mobile species, tending to ignore small and cryptobenthic species. The two main objectives of this study were to describe the assemblage structure of the cryptobenthic fish fauna and estimate the extent to which this fauna is underestimated by visual surveys. At the beginning and the end of the warm season, we compared the cryptobenthic fish assemblage recorded using visual surveys against the one recorded using "enclosed anesthetic/rotenone samples" on isolated coral colonies (N=54 beginning of warm season; N=17 end of warm season). The crypthobenthic fish fauna associated to coral colonies was characterized by small body sizes and was composed mainly by species of the families Antennaridae, Blennidae, Gobiidae, Labrisomidae, Muraenidae, Serranidae, Scorpaenidae and Syngnathidae. Conventional visual surveys underestimated overall species richness by 28-36% and number of individuals by 16-35%. Noteworthy, four species recorded during this study using "enclosed anesthetic/rotenone samples" were new records for Gorgona Island. Although both sampling methods can detect a largely overlapping group of species, the "enclosed anesthetic/rotenone samples" method was able to detect more individuals and species, including several species that visual surveys fail to detect. Although this study is the first effort to describe the cryptobenthic fish assemblage associated to coral reefs in the Tropical Eastern Pacific, our results suggest that these assemblages are an important component of the reef fish community in the region in terms of biodiversity and functional roles.

Original languageEnglish
Pages (from-to)359-371
Number of pages13
JournalRevista de biologia tropical
Issue numberSuppl. 1
Publication statusPublished - Feb-2014


  • cryptobenthic fishes
  • coral reefs
  • sampling methods
  • visual surveys
  • enclosed anesthetic/rotenone samples

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