DAISIE package for R: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Rampal Etienne; Luis Lima Valente; Albert B. Phillimore; Bart Haegeman; Joshua Lambert; Pedro Neves; Shu Xie; Richèl Bilderbeek; Torsten Hauffe; Giovanni Laudanno; Nadiah Kristensen; Raphaël Scherrer

doi:10.5281/zenodo.4054059

DAISIE package for R: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Rampal Etienne^*, Luis Lima Valente, Albert B. Phillimore, Bart Haegeman, Joshua Lambert, Pedro Neves, Shu Xie, Richèl Bilderbeek, Torsten Hauffe (Other), Giovanni Laudanno (Other), Nadiah Kristensen (Other), Raphaël Scherrer (Other)

^*Corresponding author for this work

Etienne group - Theoretical and Evolutionary Community Ecology

Research output: Non-textual form › Software › Academic

Abstract

Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction.

Original language	English
Media of output	Online
Size	1.1 MB
DOIs	https://doi.org/10.5281/zenodo.4054059 https://doi.org/10.5281/zenodo.4054058
Publication status	Published - 13-Feb-2023

Keywords

Island biogeography
R package
Phylogenetics
Maximum likelihood estimation
Birth-death model

Access to Document

10.5281/zenodo.4054059Licence: GNU LGPL
10.5281/zenodo.4054058Licence: GNU GPL

Handle.net

Persistent link

Cite this

Etienne, R. (Author), Lima Valente, L. (Author), Phillimore, A. B. (Author), Haegeman, B. (Author), Lambert, J. (Author), Neves, P. (Author), Xie, S. (Author), Bilderbeek, R. (Author), Hauffe, T. (Other), Laudanno, G. (Other), Kristensen, N. (Other), & Scherrer, R. (Other). (2023). DAISIE package for R: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. Software https://doi.org/10.5281/zenodo.4054059, https://doi.org/10.5281/zenodo.4054058

@misc{1e88d685edfd493a8ac985898109bc2b,

title = "DAISIE package for R: Dynamical Assembly of Islands by Speciation, Immigration and Extinction",

abstract = "Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction.",

keywords = "Island biogeography, R package, Phylogenetics, Maximum likelihood estimation, Birth-death model",

author = "Rampal Etienne and {Lima Valente}, Luis and Phillimore, {Albert B.} and Bart Haegeman and Joshua Lambert and Pedro Neves and Shu Xie and Rich{\`e}l Bilderbeek and Torsten Hauffe and Giovanni Laudanno and Nadiah Kristensen and Rapha{\"e}l Scherrer",

note = "03-06-2015: version 1.0.1 13-02-2023: version 4.3.1",

year = "2023",

month = feb,

day = "13",

doi = "10.5281/zenodo.4054059",

language = "English",

}

TY - ADVS

T1 - DAISIE package for R

T2 - Dynamical Assembly of Islands by Speciation, Immigration and Extinction

AU - Etienne, Rampal

AU - Lima Valente, Luis

AU - Phillimore, Albert B.

AU - Haegeman, Bart

AU - Lambert, Joshua

AU - Neves, Pedro

AU - Xie, Shu

AU - Bilderbeek, Richèl

A2 - Hauffe, Torsten

A2 - Laudanno, Giovanni

A2 - Kristensen, Nadiah

A2 - Scherrer, Raphaël

N1 - 03-06-2015: version 1.0.1 13-02-2023: version 4.3.1

PY - 2023/2/13

Y1 - 2023/2/13

N2 - Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction.

AB - Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction.

KW - Island biogeography

KW - R package

KW - Phylogenetics

KW - Maximum likelihood estimation

KW - Birth-death model

UR - https://cran.r-project.org/package=DAISIE

U2 - 10.5281/zenodo.4054059

DO - 10.5281/zenodo.4054059

M3 - Software

ER -

DAISIE package for R: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Abstract

Keywords

Access to Document

Handle.net

Other files and links

The robustness of a simple dynamic model of island biodiversity to geological and sea-level change

A simple dynamic model explains the diversity of island birds worldwide

Lake expansion elevates equilibrium diversity via increasing colonization

The robustness of a simple dynamic model of island biodiversity to geological and sea-level change

Unravelling a web of diversity

What if MacArthur & Wilson had used dated phylogenies?

Herstel vogelstand Nieuw-Zeeland duurt minstens 50 miljoen jaar

Global relationships that determine bird diversity on islands uncovered

Island biodiversity: Stable but vulnerable

AL: Adaptive Life

Cite this

DAISIE package for R: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Abstract

Keywords

Access to Document

Handle.net

Other files and links

Research output

Activities

Press/Media

Projects

Cite this