Identification of multiple independent susceptibility loci in the HLA region in Behcet's disease

Travis Hughes, Patrick Coit, Adam Adler, Vuslat Yilmaz, Kenan Aksu, Nursen Duzgun, Gokhan Keser, Ayse Cefle, Ayten Yazici, Andac Ergen, Erkan Alpsoy, Carlo Salvarani, Bruno Casali, Ina Koetter, Javier Gutierrez-Achury, Cisca Wijmenga, Haner Direskeneli, Guher Saruhan-Direskeneli, Amr H. Sawalha*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

98 Citations (Scopus)

Abstract

Behcet's disease is an inflammatory disease characterized by recurrent oral and genital ulcers and significant organ involvement. Localizing the genetic association between HLA-B*51 and Behcet's disease and exploring additional susceptibility loci in the human leukocyte antigen (HLA) region are complicated by the strong linkage disequilibrium in this region. We genotyped 8,572 variants in the extended HLA locus and carried out imputation and meta-analysis of 24,834 variants in 2 independent Behcet's disease cohorts from 2 ancestry groups. Genotyped SNPs were used to infer classical HLA alleles in the HLA-A, HLA-B, HLA-C, HLA-DQA1, HLA-DQB1 and HLA-DRB1 loci. Our data suggest that the robust HLA-B*51 association in Behcet's disease is explained by a variant located between the HLA-B and MICA genes (rs116799036: odds ratio (OR) = 3.88, P = 9.42 x 10(-5)). Three additional independent genetic associations within PSORS1C1 (rs12525170: OR = 3.01, P = 3.01 x 10(-26)), upstream of HLA-F-AS1 (rs114854070: OR = 1.95, P = 7.84 x 10(-14)) and with HLA-Cw*1602 (OR = 5.38, P = 6.07 x 10(-18)) were also identified and replicated.

Original languageEnglish
Pages (from-to)319-324
Number of pages6
JournalNature Genetics
Volume45
Issue number3
DOIs
Publication statusPublished - Mar-2013

Keywords

  • MAJOR HISTOCOMPATIBILITY COMPLEX
  • GENOME-WIDE ASSOCIATION
  • CLASS-I
  • GENETIC ASSOCIATION
  • IL23R-IL12RB2
  • ALLELES
  • IL10
  • MHC

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