Scalable Clinical Annotation with Location Evidence (SCALE)

  • Joeran S Bosma*
  • , Luc Builtjes
  • , Anindo Saha
  • , Jasper J Twilt
  • , Manolis Tsiknakis
  • , Kostas Marias
  • , Daniele Regge
  • , Nickolas Papanikolaou
  • , Ivo G Schoots
  • , Jeroen Veltman
  • , Mattijs Elschot
  • , Derya Yakar
  • , Nancy A Obuchowski
  • , Mattias P Heinrich
  • , Alessa Hering
  • , Maarten de Rooij
  • , Henkjan Huisman
  • *Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

Deep learning can mitigate the global radiologist shortage but its development requires large-scale annotated datasets. This study introduces SCALE (Scalable Clinical Annotation with Location Evidence), a fully automated method for generating voxel-level annotations. It uses location priors that are automatically extracted from medical reports, tracked biopsy coordinates, or provided anatomical sectors. We annotated a large-scale dataset comprising 17 896 cases from 16 562 patients across 24 hospitals in 10 countries and 2 continents, using both SCALE and a count-based weakly semisupervised learning (CWSSL) method. An optimized algorithm was developed and trained on these datasets. Evaluation with 1561 cases from 1561 patients across 19 hospitals in 3 countries and 1 continent showed the superiority of the model trained on the dataset with SCALE annotations, achieving a case-level area under the receiver operating characteristic curve of 0.856. This is +0.012 compared to supervised learning (p=0.02), +0.007 compared to training with CWSSL (p=0.12), and +0.006 compared to the Prostate Imaging: Cancer AI (PI-CAI) Ensemble AI System. These results demonstrate that automated, location-guided annotation enables scalable development of AI for clinically significant prostate cancer detection on MRI, surpassing previous methods, and paving the way for broader clinical deployment.

Original languageEnglish
Article number111321
Number of pages9
JournalComputers in biology and medicine
Volume199
Early online date21-Nov-2025
DOIs
Publication statusPublished - Dec-2025

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