Abstract
The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology. (C) 2009 Elsevier Inc. All rights reserved.
Original language | English |
---|---|
Pages (from-to) | S2-S13 |
Number of pages | 12 |
Journal | Fungal Genetics and Biology |
Volume | 46 |
Issue number | 1 |
DOIs | |
Publication status | Published - Mar-2009 |
Keywords
- Aspergillus nidulans
- Aspergilli
- Genome
- Annotation
- Fungal community
- Assembly
- Transcription factors
- CADRE
- GENE-CLUSTER
- TRANSCRIPTIONAL ACTIVATOR
- CELL-WALL
- A-FUMIGATUS
- PREDICTION
- SEQUENCE
- NIGER
- DNA
- IDENTIFICATION
- BIOSYNTHESIS
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The 2008 update of the Aspergillus nidulans genome annotation A community effort
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The 2008 update of the Aspergillus nidulans genome annotation : A community effort. / Wortman, Jennifer Russo; Gilsenan, Jane Mabey; Joardar, Vinita; Deegan, Jennifer; Clutterbuck, John; Andersen, Mikael R.; Archer, David; Bencina, Mojca; Braus, Gerhard; Coutinho, Pedro; von Doehren, Hans; Doonan, John; Driessen, Arnold J. M.; Durek, Pawel; Espeso, Eduardo; Fekete, Erzsebet; Flipphi, Michel; Garcia Estrada, Carlos; Geysens, Steven; Goldman, Gustavo; de Groot, Piet W. J.; Hansen, Kim; Harris, Steven D.; Heinekamp, Thorsten; Helmstaedt, Kerstin; Henrissat, Bernard; Hofmann, Gerald; Homan, Tim; Horio, Tetsuya; Horiuchi, Hiroyuki; James, Steve; Jones, Meriel; Karaffa, Levente; Karanyi, Zsolt; Kato, Masashi; Keller, Nancy; Kelly, Diane E.; Kiel, Jan A. K. W.; Kim, Jung-Mi; van der Klei, Ida J.; Klis, Frans M.; Kovalchuk, Andriy; Krasevec, Nada; Kubicek, Christian P.; Liu, Bo; MacCabe, Andrew; Meyer, Vera; Mirabito, Pete; Miskei, Marton; Mos, Magdalena; Mullins, Jonathan; Nelson, David R.; Nielsen, Jens; Oakley, Berl R.; Osmani, Stephen A.; Pakula, Tiina; Paszewski, Andrzej; Paulsen, Ian; Pilsyk, Sebastian; Pocsi, Istvan; Punt, Peter J.; Ram, Arthur F. J.; Ren, Qinghu; Robellet, Xavier; Robson, Geoff; Seiboth, Bernhard; van Solingen, Piet; Specht, Thomas; Sun, Jibin; Taheri-Talesh, Naimeh; Takeshita, Norio; Ussery, Dave; Vankuyk, Patricia A.; Visser, Hans; de Vondervoort, Peter J. I. van; Walton, Jonathan; Xiang, Xin; Xiong, Yi; Zeng, An Ping; Brandt, Bernd W.; Cornell, Michael J.; van den Hondel, Cees A. M. J. J.; Visser, Jacob; Oliver, Stephen G.; Turner, Geoffrey; Kraševec, Nada; Kuyk, Patricia A. van; Döhren, D.H.; van Seilboth, B; de Vries, R.
In: Fungal Genetics and Biology, Vol. 46, No. 1, 03.2009, p. S2-S13.Research output: Contribution to journal › Article › Academic › peer-review
TY - JOUR
T1 - The 2008 update of the Aspergillus nidulans genome annotation
T2 - A community effort
AU - Wortman, Jennifer Russo
AU - Gilsenan, Jane Mabey
AU - Joardar, Vinita
AU - Deegan, Jennifer
AU - Clutterbuck, John
AU - Andersen, Mikael R.
AU - Archer, David
AU - Bencina, Mojca
AU - Braus, Gerhard
AU - Coutinho, Pedro
AU - von Doehren, Hans
AU - Doonan, John
AU - Driessen, Arnold J. M.
AU - Durek, Pawel
AU - Espeso, Eduardo
AU - Fekete, Erzsebet
AU - Flipphi, Michel
AU - Garcia Estrada, Carlos
AU - Geysens, Steven
AU - Goldman, Gustavo
AU - de Groot, Piet W. J.
AU - Hansen, Kim
AU - Harris, Steven D.
AU - Heinekamp, Thorsten
AU - Helmstaedt, Kerstin
AU - Henrissat, Bernard
AU - Hofmann, Gerald
AU - Homan, Tim
AU - Horio, Tetsuya
AU - Horiuchi, Hiroyuki
AU - James, Steve
AU - Jones, Meriel
AU - Karaffa, Levente
AU - Karanyi, Zsolt
AU - Kato, Masashi
AU - Keller, Nancy
AU - Kelly, Diane E.
AU - Kiel, Jan A. K. W.
AU - Kim, Jung-Mi
AU - van der Klei, Ida J.
AU - Klis, Frans M.
AU - Kovalchuk, Andriy
AU - Krasevec, Nada
AU - Kubicek, Christian P.
AU - Liu, Bo
AU - MacCabe, Andrew
AU - Meyer, Vera
AU - Mirabito, Pete
AU - Miskei, Marton
AU - Mos, Magdalena
AU - Mullins, Jonathan
AU - Nelson, David R.
AU - Nielsen, Jens
AU - Oakley, Berl R.
AU - Osmani, Stephen A.
AU - Pakula, Tiina
AU - Paszewski, Andrzej
AU - Paulsen, Ian
AU - Pilsyk, Sebastian
AU - Pocsi, Istvan
AU - Punt, Peter J.
AU - Ram, Arthur F. J.
AU - Ren, Qinghu
AU - Robellet, Xavier
AU - Robson, Geoff
AU - Seiboth, Bernhard
AU - van Solingen, Piet
AU - Specht, Thomas
AU - Sun, Jibin
AU - Taheri-Talesh, Naimeh
AU - Takeshita, Norio
AU - Ussery, Dave
AU - Vankuyk, Patricia A.
AU - Visser, Hans
AU - de Vondervoort, Peter J. I. van
AU - Walton, Jonathan
AU - Xiang, Xin
AU - Xiong, Yi
AU - Zeng, An Ping
AU - Brandt, Bernd W.
AU - Cornell, Michael J.
AU - van den Hondel, Cees A. M. J. J.
AU - Visser, Jacob
AU - Oliver, Stephen G.
AU - Turner, Geoffrey
AU - Kraševec, Nada
AU - Kuyk, Patricia A. van
AU - Döhren, D.H.
AU - van Seilboth, B
AU - de Vries, R.
PY - 2009/3
Y1 - 2009/3
N2 - The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology. (C) 2009 Elsevier Inc. All rights reserved.
AB - The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology. (C) 2009 Elsevier Inc. All rights reserved.
KW - Aspergillus nidulans
KW - Aspergilli
KW - Genome
KW - Annotation
KW - Fungal community
KW - Assembly
KW - Transcription factors
KW - CADRE
KW - GENE-CLUSTER
KW - TRANSCRIPTIONAL ACTIVATOR
KW - CELL-WALL
KW - A-FUMIGATUS
KW - PREDICTION
KW - SEQUENCE
KW - NIGER
KW - DNA
KW - IDENTIFICATION
KW - BIOSYNTHESIS
U2 - 10.1016/j.fgb.2008.12.003
DO - 10.1016/j.fgb.2008.12.003
M3 - Article
VL - 46
SP - S2-S13
JO - Fungal Genetics and Biology
JF - Fungal Genetics and Biology
SN - 1087-1845
IS - 1
ER -