Abstract
Background Patient data registries that are FAIR-Findable, Accessible, Interoperable, and Reusable for humans and computers-facilitate research across multiple resources. This is particularly relevant to rare diseases, where data often are scarce and scattered. Specific research questions can be asked across FAIR rare disease registries and other FAIR resources without physically combining the data. Further, FAIR implies well-defined, transparent access conditions, which supports making sensitive data as open as possible and as closed as necessary. Results We successfully developed and implemented a process of making a rare disease registry for vascular anomalies FAIR from its conception-de novo. Here, we describe the five phases of this process in detail: (i) pre-FAIRification, (ii) facilitating FAIRification, (iii) data collection, (iv) generating FAIR data in real-time, and (v) using FAIR data. This includes the creation of an electronic case report form and a semantic data model of the elements to be collected (in this case: the "Set of Common Data Elements for Rare Disease Registration" released by the European Commission), and the technical implementation of automatic, real-time data FAIRification in an Electronic Data Capture system. Further, we describe how we contribute to the four facets of FAIR, and how our FAIRification process can be reused by other registries. Conclusions In conclusion, a detailed de novo FAIRification process of a registry for vascular anomalies is described. To a large extent, the process may be reused by other rare disease registries, and we envision this work to be a substantial contribution to an ecosystem of FAIR rare disease resources.
| Original language | English |
|---|---|
| Article number | 376 |
| Number of pages | 10 |
| Journal | Orphanet journal of rare diseases |
| Volume | 16 |
| Issue number | 1 |
| DOIs | |
| Publication status | Published - 4-Sept-2021 |
Keywords
- Rare diseases
- Patient registry
- Vascular anomalies
- FAIR data
- FAIRification process
- Interoperability
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Additional file 1 of Towards FAIRification of sensitive and fragmented rare disease patient data: challenges and solutions in European reference network registries
dos Santos Vieira, B. (Creator), Bernabé, C. H. (Creator), Zhang, S. (Creator), Abaza, H. (Creator), Benis, N. (Creator), Cámara, A. (Creator), Cornet, R. (Creator), Le Cornec, C. M. A. (Creator), ’t Hoen, P. A. C. (Creator), Schaefer, F. (Creator), van der Velde, J. (Creator), Swertz, M. A. (Creator), Wilkinson, M. D. (Creator), Jacobsen, A. (Creator), Roos, M. (Creator), Schaefer, F. (Creator) & Swertz, M. A. (Creator), figshare, 14-Dec-2023
DOI: 10.6084/m9.figshare.22609630, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Towards_FAIRification_of_sensitive_and_fragmented_rare_disease_patient_data_challenges_and_solutions_in_European_reference_network_registries/22609630
Dataset
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Additional file 2 of Towards FAIRification of sensitive and fragmented rare disease patient data: challenges and solutions in European reference network registries
dos Santos Vieira, B. (Creator), Bernabé, C. H. (Creator), Zhang, S. (Creator), Abaza, H. (Creator), Benis, N. (Creator), Cámara, A. (Creator), Cornet, R. (Creator), Le Cornec, C. M. A. (Creator), ’t Hoen, P. A. C. (Creator), Schaefer, F. (Creator), van der Velde, J. (Creator), Swertz, M. A. (Creator), Wilkinson, M. D. (Creator), Jacobsen, A. (Creator), Roos, M. (Creator), Schaefer, F. (Creator) & Swertz, M. A. (Creator), figshare, 14-Dec-2023
DOI: 10.6084/m9.figshare.22609633.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Towards_FAIRification_of_sensitive_and_fragmented_rare_disease_patient_data_challenges_and_solutions_in_European_reference_network_registries/22609633/1
Dataset