Single cell whole genome sequencing of high hyperdiploid acute lymphoblastic leukemia

  • Eleanor Woodward (Contributor)
  • Minjun Yang (Contributor)
  • Larissa Helena Moura-Castro (Contributor)
  • Hilda van den Bos (Contributor)
  • Rebeqa Gunnarsson (Contributor)
  • Linda Olsson Arvidsson (Contributor)
  • Diana Spierings (Contributor)
  • Anders Castor (Contributor)
  • Nicolas Duployez (Contributor)
  • Marketa Zaliova (Contributor)
  • Jan Zuna (Contributor)
  • Bertil Johansson (Contributor)
  • Floris Foijer (Contributor)
  • Kajsa Paulsson (Contributor)

Dataset

Description

This dataset was collected from viable bone marrow cells obtained at diagnosis from nine patients with high hyperdiploid ALL and one normal bone marrow sample. All samples were subjected to low pass single cell whole genome sequencing with the median sequencing coverage of 0.02x. Single nuclei in G0/G1 phase were isolated using a fluorescence-activated cell sorting (FACS) cytometer. DNA libraries were constructed and associated next-generation sequencing was carried out by European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, Groningen, The Netherlands. Further details regarding the DNA libraries construction are available by Bos et. al., 2019 (https://link.springer.com/protocol/10.1007/978-1-4939-8931-7_15). The dataset has been used for copy number aberrations analysis.
Datum van beschikbaarheid22-feb.-2022
UitgeverNational Bioinformatics Infrastructure Sweden

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