John Rossen

Zoekresultaten

• Additional file 3: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

  Van Hoek, A. H. A. M. (Contributor), Van Veldhuizen, J. N. J. (Contributor), Friesema, I. (Contributor), Coipan, C. (Contributor), Rossen, J. (Contributor), Bergval, I. L. (Contributor) & Franz, E. (Contributor), University of Groningen, 5-apr.-2019

  DOI: 10.6084/m9.figshare.7961252.v1

  Dataset

• Data from: Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis

  Peker, N. (Contributor), Schüle, L. (Contributor), Kok, N. (Contributor), Terrazos, M. (Contributor), Neuenschwander, S. M. (Contributor), de Beer, J. (Contributor), Akkerman, O. (Contributor), Peter, S. (Contributor), Ramette, A. (Contributor), Merker, M. (Contributor), Niemann, S. (Contributor), Couto, N. (Contributor), Sinha, B. (Contributor) & Rossen, J. (Contributor), figshare Academic Research System, 24-nov.-2021

  DOI: 10.6084/m9.figshare.17075987.v1

  Dataset

• Additional file 2: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

  Van Hoek, A. H. A. M. (Contributor), Van Veldhuizen, J. N. J. (Contributor), Friesema, I. (Contributor), Coipan, C. (Contributor), Rossen, J. (Contributor), Bergval, I. L. (Contributor) & Franz, E. (Contributor), University of Groningen, 5-apr.-2019

  DOI: 10.6084/m9.figshare.7961243.v1

  Dataset

• Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in Enterobacteriaceae using PlasmidSPAdes assembly of short-read sequence data

  Stohr, J. J. J. M. (Contributor), Kluytmans-Van Den Bergh, M. F. Q. (Contributor), Wedema, R. (Contributor), Friedrich, A. W. (Contributor), Kluytmans, J. A. J. W. (Contributor) & Rossen, J. (Contributor), University of Groningen, 9-jun.-2020

  DOI: 10.6084/m9.figshare.12423875.v1

  Dataset

• Additional file 8 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

  Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. W. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-okt.-2021

  DOI: 10.6084/m9.figshare.16863942.v1, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863942/1

  Dataset

• Additional file 1 of Longitudinal study of the short- and long-term effects of hospitalisation and oral trimethoprim-sulfadiazine administration on the equine faecal microbiome and resistome

  Theelen, M. J. P. (Creator), Luiken, R. E. C. (Creator), Wagenaar, J. A. (Creator), Sloet van Oldruitenborgh-Oosterbaan, M. M. (Creator), Rossen, J. W. A. (Creator), Schaafstra, F. J. W. C. (Creator), van Doorn, D. A. (Creator) & Zomer, A. L. (Creator), figshare, 27-feb.-2023

  DOI: 10.6084/m9.figshare.22615274.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Longitudinal_study_of_the_short-_and_long-term_effects_of_hospitalisation_and_oral_trimethoprim-sulfadiazine_administration_on_the_equine_faecal_microbiome_and_resistome/22615274/1

  Dataset

• Additional file 4 of Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity

  Hendriks, A. C. A. (Creator), Reubsaet, F. A. G. (Creator), Kooistra-Smid, M. (Contributor), Rossen, J. (Creator), Dutilh, B. E. (Creator), Zomer, A. L. (Contributor), Van Den Beld, M. J. C. (Contributor) & Kooistra-Smid, A. M. D. (Contributor), figshare, 10-feb.-2020

  DOI: 10.6084/m9.figshare.11835132.v1, https://springernature.figshare.com/articles/Additional_file_4_of_Genome-wide_association_studies_of_Shigella_spp_and_Enteroinvasive_Escherichia_coli_isolates_demonstrate_an_absence_of_genetic_markers_for_prediction_of_disease_severity/11835132/1

  Dataset

• Supplementary material from After the bite: bacterial transmission from grey seals (Halichoerus grypus) to harbour porpoises (Phocoena phocoena)

  Gilbert, M. J. (Contributor), IJsseldijk, L. L. (Contributor), Rubio Garcia, A. (Contributor), Gröne, A. (Contributor), Duim, B. (Contributor), Rossen, J. (Contributor), Zomer, A. L. (Contributor) & Wagenaar, J. A. (Contributor), University of Groningen, 7-mei-2020

  DOI: 10.6084/m9.figshare.12254480.v1

  Dataset

• Additional file 5 of Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity

  Hendriks, A. C. A. (Creator), Reubsaet, F. A. G. (Creator), Kooistra-Smid, M. (Contributor), Rossen, J. (Creator), Dutilh, B. E. (Creator), Zomer, A. L. (Contributor), Van Den Beld, M. J. C. (Contributor) & Kooistra-Smid, A. M. D. (Contributor), figshare, 10-feb.-2020

  DOI: 10.6084/m9.figshare.11835138.v1, https://springernature.figshare.com/articles/Additional_file_5_of_Genome-wide_association_studies_of_Shigella_spp_and_Enteroinvasive_Escherichia_coli_isolates_demonstrate_an_absence_of_genetic_markers_for_prediction_of_disease_severity/11835138/1

  Dataset

• DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenomic sequencing

  Marques de Sousa Mendes, C. (Contributor), Lizarazo, E. (Contributor), Machado, M. P. (Contributor), Silva, D. N. (Contributor), Tami, A. (Contributor), Ramirez, M. (Contributor), Couto, N. (Contributor), Rossen, J. (Contributor) & Carriço, J. A. (Contributor), University of Groningen, 6-jan.-2020

  DOI: 10.6084/m9.figshare.11316599.v1

  Dataset

• Additional file 9 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

  Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. W. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-okt.-2021

  DOI: 10.6084/m9.figshare.16863945.v1, https://springernature.figshare.com/articles/dataset/Additional_file_9_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863945/1

  Dataset

• Additional file 3 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

  Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Contributor), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. W. (Contributor), Rossen, J. (Contributor), Harmsen, H. J. M. (Contributor), Bathoorn, E. (Contributor) & Fliss, M. (Contributor), figshare Academic Research System, 24-okt.-2021

  DOI: 10.6084/m9.figshare.16863921.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863921/1

  Dataset

• Table S1 from After the bite: bacterial transmission from grey seals (Halichoerus grypus) to harbour porpoises (Phocoena phocoena)

  Gilbert, M. J. (Contributor), IJsseldijk, L. L. (Contributor), Rubio-García, A. (Contributor), Gröne, A. (Contributor), Duim, B. (Contributor), Rossen, J. (Contributor), Zomer, A. L. (Contributor) & Wagenaar, J. A. (Contributor), University of Groningen, 7-mei-2020

  DOI: 10.6084/m9.figshare.12254486.v1

  Dataset

• Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study

  Damasco, P. V. (Contributor), Correal, J. C. D. (Contributor), Cruz-Campos, A. C. D. (Contributor), Wajsbrot, B. R. (Contributor), Cunha, R. G. D. (Contributor), Fonseca, A. G. D. (Contributor), Castier, M. B. (Contributor), Fortes, C. Q. (Creator), Jazbick, J. C. (Contributor), Lemos, E. R. S. D. (Contributor), Rossen, J. (Contributor), Leão, R. D. S. (Contributor), Hirata Junior, R. (Contributor) & Guaraldi, A. L. D. M. (Contributor), University of Groningen, 12-jun.-2019

  DOI: 10.6084/m9.figshare.8260109.v1

  Dataset

• Additional file 1: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

  Van Hoek, A. H. A. M. (Contributor), Van Veldhuizen, J. N. J. (Contributor), Friesema, I. (Contributor), Coipan, C. (Contributor), Rossen, J. (Contributor), Bergval, I. L. (Contributor) & Franz, E. (Contributor), University of Groningen, 5-apr.-2019

  DOI: 10.6084/m9.figshare.7961237.v1

  Dataset

• An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae

  Nepal, S. (Contributor), Bonn, F. (Creator), Grasso, S. (Creator), Stobernack, T. (Contributor), de Jong, A. (Contributor), Zhou, K. (Contributor), Wedema, R. (Contributor), Rosema, S. (Contributor), Becher, D. (Creator), Otto, A. (Creator), Rossen, J. (Contributor), Van Dijl, J. M. (Contributor) & Bathoorn, E. (Contributor), Taylor & Francis Group, 13-aug.-2018

  DOI: 10.6084/m9.figshare.6960083, https://tandf.figshare.com/articles/An_ancient_family_of_mobile_genomic_islands_introducing_cephalosporinase_and_carbapenemase_genes_in_i_Enterobacteriaceae_i_/6960083

  Dataset

• Additional file 1 of Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

  Lisotto, P. (Contributor), Raangs, E. (Contributor), Couto, N. (Creator), Rosema, S. (Contributor), Lokate, M. (Contributor), Zhou, X. (Contributor), Friedrich, A. W. (Creator), Rossen, J. (Contributor), Harmsen, H. J. M. (Creator), Bathoorn, E. (Contributor), Fliss, M. (Creator) & Fliss, M. (Contributor), figshare, 23-okt.-2021

  DOI: 10.6084/m9.figshare.16863915, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Long-read_sequencing-based_in_silico_phage_typing_of_vancomycin-resistant_Enterococcus_faecium/16863915

  Dataset

• MOESM1 of Incidence, clinical implications and impact on public health of infections with Shigella spp. and entero-invasive Escherichia coli (EIEC): results of a multicenter cross-sectional study in the Netherlands during 2016–2017

  Van Den Beld, M. J. C. (Contributor), Warmelink, E. (Creator), Friedrich, A. W. (Creator), Reubsaet, F. A. G. (Creator), Schipper, M. (Creator), De Boer, R. F. (Contributor), Notermans, D. W. (Creator), Petrignani, M. W. F. (Creator), Van Zanten, E. (Contributor), Rossen, J. (Contributor), Friesema, I. H. M. (Creator) & Kooistra-Smid, M. (Contributor), figshare, 9-dec.-2019

  DOI: 10.6084/m9.figshare.11345888, https://springernature.figshare.com/articles/MOESM1_of_Incidence_clinical_implications_and_impact_on_public_health_of_infections_with_Shigella_spp_and_entero-invasive_Escherichia_coli_EIEC_results_of_a_multicenter_cross-sectional_study_in_the_Netherlands_during_2016_2017/11345888

  Dataset

• Dataset: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

  Monge Gomes do Couto, N. (Creator), Schüle, L. (Creator), Raangs, G. (Creator), Machado, M. P. (Creator), Marques de Sousa Mendes, C. (Creator), Jesus, T. F. (Creator), Chlebowicz, M. (Creator), Rosema, S. (Creator), Ramirez, M. (Creator), Carriço, J. A. (Creator), Autenrieth, I. B. (Creator), Friedrich, A. (Creator), Peter, S. (Creator) & Rossen, J. (Creator), University of Groningen, 10-mei-2018

  DOI: 10.6084/m9.figshare.5679376, https://figshare.com/articles/cgMLST_and_accessory_ref-seq/5679376

  Dataset

• Additional file 3 of Longitudinal study of the short- and long-term effects of hospitalisation and oral trimethoprim-sulfadiazine administration on the equine faecal microbiome and resistome

  Theelen, M. J. P. (Creator), Luiken, R. E. C. (Creator), Wagenaar, J. A. (Creator), Sloet van Oldruitenborgh-Oosterbaan, M. M. (Creator), Rossen, J. W. A. (Creator), Schaafstra, F. J. W. C. (Creator), van Doorn, D. A. (Creator) & Zomer, A. L. (Creator), figshare, 27-feb.-2023

  DOI: 10.6084/m9.figshare.22615280, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Longitudinal_study_of_the_short-_and_long-term_effects_of_hospitalisation_and_oral_trimethoprim-sulfadiazine_administration_on_the_equine_faecal_microbiome_and_resistome/22615280

  Dataset

• Additional file 1 of Longitudinal study of the short- and long-term effects of hospitalisation and oral trimethoprim-sulfadiazine administration on the equine faecal microbiome and resistome

  Theelen, M. J. P. (Creator), Luiken, R. E. C. (Creator), Wagenaar, J. A. (Creator), Sloet van Oldruitenborgh-Oosterbaan, M. M. (Creator), Rossen, J. W. A. (Creator), Schaafstra, F. J. W. C. (Creator), van Doorn, D. A. (Creator) & Zomer, A. L. (Creator), figshare, 27-feb.-2023

  DOI: 10.6084/m9.figshare.22615274, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Longitudinal_study_of_the_short-_and_long-term_effects_of_hospitalisation_and_oral_trimethoprim-sulfadiazine_administration_on_the_equine_faecal_microbiome_and_resistome/22615274

  Dataset