Sebastian Lequime

Zoekresultaten

• 2022

  Aquatic flaviviruses

  Lensink, M. J., Li, Y. & Lequime, S., sep.-2022, In: Journal of Virology. 96, 17, 8 blz., e0043922.

  Onderzoeksoutput › peer review

• Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

  Patrono, L. V., Vrancken, B., Budt, M., Düx, A., Lequime, S., Boral, S., Gilbert, M. T. P., Gogarten, J. F., Hoffmann, L., Horst, D., Merkel, K., Morens, D., Prepoint, B., Schlotterbeck, J., Schuenemann, V. J., Suchard, M. A., Taubenberger, J. K., Tenkhoff, L., Urban, C., Widulin, N., & 6 anderenWinter, E., Worobey, M., Schnalke, T., Wolff, T., Lemey, P. & Calvignac-Spencer, S., 2022, In: Nature Communications. 13, 1, blz. 2314

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  2 Citaten (Scopus)

  7 Downloads (Pure)

• Endogenous viral elements in shrew genomes provide insights into Pestivirus ancient history

  Li, Y. Q., Bletsa, M., Zisi, Z., Boonen, I., Gryseels, S., Kafetzopoulou, L. E., Webster, J. P., Catalano, S., Pybus, O. G., Van de Perre, F., Li, H. T., Li, Y. Y., Li, Y. C., Abramov, A., Lymberakis, P., Lemey, P. & Lequime, S., okt.-2022, In: Molecular Biology and Evolution. 39, 10

  Onderzoeksoutput › Academic › peer review

  Open Access

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  6 Downloads (Pure)

• First report of Pepo aphid-borne yellows virus infecting watermelon (Citrullus lanatus) in Uganda

  Masika, F. B., Lequime, S., Alicai, T., Athman, S. Y., Ipulet, P., Ddamulira, G. & Tugume, A. K., jul.-2022, In: New Disease Reports. 46, 1, 2 blz., e12110.

  Onderzoeksoutput: Comment/Letter to the editor › Academic › peer review

  Open Access

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  12 Downloads (Pure)

• Innate immune pathways act synergistically to constrain RNA virus evolution in Drosophila melanogaster

  Mongelli, V., Lequime, S., Kousathanas, A., Gausson, V., Blanc, H., Nigg, J., Quintana-Murci, L., Elena, S. F. & Saleh, M-C., mei-2022, In: Nature Ecology & Evolution. 6, blz. 565–578 14 blz.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  3 Citaten (Scopus)

  26 Downloads (Pure)

• Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs

  Gestuveo, R. J., Parry, R., Dickson, L. B., Lequime, S., Sreenu, V. B., Arnold, M. J., Khromykh, A. A., Schnettler, E., Lambrechts, L., Varjak, M. & Kohl, A., jan.-2022, In: PLoS Pathogens. 18, 1, e1010202.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  80 Downloads (Pure)

• The viral susceptibility of the Haloferax species

  Sourrouille, Z. A., Schwarzer, S., Lequime, S., Oksanen, H. M. & Quax, T. E. F., jun.-2022, In: Viruses. 14, 6, 15 blz., 1344.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  11 Downloads (Pure)
• 2021

  Molecular detection and genomic characterization of diverse hepaciviruses in African rodents

  Bletsa, M., Vrancken, B., Gryseels, S., Boonen, I., Fikatas, A., Li, Y., Laudisoit, A., Lequime, S., Bryja, J., Makundi, R., Meheretu, Y., Akaibe, B. D., Mbalitini, S. G., Van de Perre, F., Van Houtte, N., Těšíková, J., Wollants, E., Van Ranst, M., Pybus, O. G., Drexler, J. F., & 4 anderenVerheyen, E., Leirs, H., Gouy de Bellocq, J. & Lemey, P., 12-apr.-2021, In: Virus evolution. 7, 1, veab036.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  5 Citaten (Scopus)

  4 Downloads (Pure)

• Potential role of vector-mediated natural selection in dengue virus genotype/lineage replacements in two epidemiologically contrasted settings

  O’Connor, O., Ou, T. P., Aubry, F., Dabo, S., Russet, S., Girault, D., In, S., Minier, M., Lequime, S., Hoem, T., Boyer, S., Dussart, P., Pocquet, N., Burtet-Sarramegna, V., Lambrechts, L., Duong, V. & Dupont-Rouzeyrol, M., 2021, In: Emerging Microbes and Infections. 10, 1, blz. 1346-1357 12 blz.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  3 Citaten (Scopus)

  7 Downloads (Pure)

• Recent African strains of Zika virus display higher transmissibility and fetal pathogenicity than Asian strains

  Aubry, F., Jacobs, S., Darmuzey, M., Lequime, S., Delang, L., Fontaine, A., Jupatanakul, N., Miot, E. F., Dabo, S., Manet, C., Montagutelli, X., Baidaliuk, A., Gámbaro, F., Simon-Lorière, E., Gilsoul, M., Romero-Vivas, C. M., Cao-Lormeau, V-M., Jarman, R. G., Diagne, C. T., Faye, O., & 6 anderenFaye, O., Sall, A. A., Neyts, J., Nguyen, L., Kaptein, S. J. F. & Lambrechts, L., 10-feb.-2021, In: Nature Communications. 12, 1, blz. 1-14 14 blz., 916.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  34 Citaten (Scopus)

  27 Downloads (Pure)
• 2020

  Een verhelderende kijk in het duistere verleden

  Vrancken, B. & Lequime, S., okt.-2020, In: Analyse. 75, 5

  Onderzoeksoutput › Professional

• Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

  Dellicour, S., Lequime, S., Vrancken, B., Gill, M. S., Bastide, P., Gangavarapu, K., Matteson, N. L., Tan, Y., du Plessis, L., Fisher, A. A., Nelson, M. I., Gilbert, M., Suchard, M. A., Andersen, K. G., Grubaugh, N. D., Pybus, O. G. & Lemey, P., 6-nov.-2020, In: Nature Communications. 11, 1, 11 blz., 5620.

  Onderzoeksoutput › Academic › peer review

  Open Access
  10 Citaten (Scopus)

  54 Downloads (Pure)

• Épisode 1 - La Lumière de l'Évolution

  Lequime, S., Harrivelle, P-B. & Louis, T., 9-okt.-2020

  Onderzoeksoutput › Popular

  Open Access

• Épisode 2 - Reconstruire le Passé

  Lequime, S., Harrivelle, P-B. & Louis, T., 9-okt.-2020

  Onderzoeksoutput › Popular

  Open Access

• Épisode 3 - Comprendre les Épidémies

  Lequime, S., Harrivelle, P-B. & Louis, T., 9-okt.-2020

  Onderzoeksoutput › Popular

  Open Access

• Experimental adaptation of dengue virus 1 to Aedes albopictus mosquitoes by in vivo selection

  Bellone, R., Lequime, S., Jupille, H., Göertz, G. P., Aubry, F., Mousson, L., Piorkowski, G., Yen, P-S., Gabiane, G., Vazeille, M., Sakuntabhai, A., Pijlman, G. P., de Lamballerie, X., Lambrechts, L. & Failloux, A-B., 27-okt.-2020, In: Scientific Reports. 10, 1, 17 blz., 18404.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  4 Citaten (Scopus)

  64 Downloads (Pure)

• Genomic epidemiology of 2015-2016 Zika virus outbreak in Cape Verde

  Faye, O., de Lourdes Monteiro, M., Vrancken, B., Prot, M., Lequime, S., Diarra, M., Ndiaye, O., Valdez, T., Tavarez, S., Ramos, J., da Veiga Leal, S., Pires, C., Moreira, A., Tavares, M. F., Fernandes, L., Barreto, J. N., do Céu Teixeira, M., de Lima Mendonça, M. D. L., Gomes, C. C. D. S. L., Castellon, M. S., & 14 anderenMa, L., Lemoine, F., Gámbaro-Roglia, F., Delaune, D., Fall, G., Fall, I. S., Diop, M., Sakuntabhai, A., Loucoubar, C., Lemey, P., Holmes, E. C., Faye, O., Sall, A. A. & Simon-Loriere, E., jun.-2020, In: Emerging Infectious Diseases. 26, 6, blz. 1084-1090 7 blz.

  Onderzoeksoutput › Academic › peer review
  14 Citaten (Scopus)

• Measles virus and rinderpest virus divergence dated to the sixth century BCE

  Düx, A., Lequime, S., Patrono, L. V., Vrancken, B., Boral, S., Gogarten, J. F., Hilbig, A., Horst, D., Merkel, K., Prepoint, B., Santibanez, S., Schlotterbeck, J., Suchard, M. A., Ulrich, M., Widulin, N., Mankertz, A., Leendertz, F. H., Harper, K., Schnalke, T., Lemey, P., & 1 anderenCalvignac-Spencer, S., 19-jun.-2020, In: Science. 368, 6497, blz. 1367-1370 4 blz.

  Onderzoeksoutput › Academic › peer review
  47 Citaten (Scopus)

• Modeling intra-mosquito dynamics of Zika virus and its dose-dependence confirms the low epidemic potential of Aedes albopictus

  Lequime, S., Dehecq, J-S., Matheus, S., de Laval, F., Almeras, L., Briolant, S. & Fontaine, A., 31-dec.-2020, In: PLoS Pathogens. 16, 12, 25 blz., e1009068.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  5 Citaten (Scopus)

  101 Downloads (Pure)

• Non-retroviral endogenous viral element limits cognate virus replication in Aedes aegypti ovaries

  Suzuki, Y., Baidaliuk, A., Miesen, P., Frangeul, L., Crist, A. B., Merkling, S. H., Fontaine, A., Lequime, S., Moltini-Conclois, I., Blanc, H., van Rij, R. P., Lambrechts, L. & Saleh, M-C., 21-sep.-2020, In: Current Biology. 30, 18, blz. 3495-3506.e6

  Onderzoeksoutput › Academic › peer review

  Open Access

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  42 Citaten (Scopus)

  17 Downloads (Pure)

• nosoi

  Lequime, S., Bastide, P., Dellicour, S., Lemey, P. & Baele, G., 2020

  Onderzoeksoutput: Software › Academic

• nosoi: A stochastic agent-based transmission chain simulation framework in R

  Lequime, S., Paul, B., Dellicour, S., Lemey, P. & Baele, G., 28-mei-2020, In: Methods in ecology and evolution. 11, 8, blz. 1002-1007 6 blz.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  9 Citaten (Scopus)

  58 Downloads (Pure)

• Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny with the genetic structure of Aedes aegypti populations

  Baidaliuk, A., Lequime, S., Moltini-Conclois, I., Dabo, S., Dickson, L. B., Prot, M., Duong, V., Dussart, P., Boyer, S., Shi, C., Matthijnssens, J., Guglielmini, J., Gloria-Soria, A., Simon-Lorière, E. & Lambrechts, L., jan.-2020, In: Virus evolution. 6, 1, 14 blz., veaa018.

  Onderzoeksoutput › Academic › peer review

  Open Access
  12 Citaten (Scopus)

  11 Downloads (Pure)

• Wolbachia modulates prevalence and viral load of Culex pipiens densoviruses in natural populations

  Altinli, M., Lequime, S., Atyame, C., Justy, F., Weill, M. & Sicard, M., okt.-2020, In: Molecular Ecology. 29, 20, blz. 4000-4013 14 blz.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  4 Citaten (Scopus)

  55 Downloads (Pure)
• 2019

  Cell-fusing agent virus reduces arbovirus dissemination in Aedes aegypti mosquitoes in vivo

  Baidaliuk, A., Miot, E. F., Lequime, S., Moltini-Conclois, I., Delaigue, F., Dabo, S., Dickson, L. B., Aubry, F., Merkling, S. H., Cao-Lormeau, V-M. & Lambrechts, L., 15-sep.-2019, In: Journal of Virology. 93, 18

  Onderzoeksoutput › Academic › peer review

  Open Access

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  42 Citaten (Scopus)

  20 Downloads (Pure)

• Evolution and phylogeography of Culex pipiens densovirus

  Altinli, M., Lequime, S., Courcelle, M., François, S., Justy, F., Gosselin-Grenet, A-S., Ogliastro, M., Weill, M. & Sicard, M., jul.-2019, In: Virus evolution. 5, 2, 12 blz., vez053.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  3 Citaten (Scopus)

  25 Downloads (Pure)

• RNA structure duplication in the dengue virus 3' UTR: Redundancy or host specificity?

  de Borba, L., Villordo, S. M., Marsico, F. L., Carballeda, J. M., Filomatori, C. V., Gebhard, L. G., Pallarés, H. M., Lequime, S., Lambrechts, L., Sánchez Vargas, I., Blair, C. D. & Gamarnik, A. V., 8-jan.-2019, In: Mbio. 10, 1

  Onderzoeksoutput › Academic › peer review

  Open Access

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  37 Citaten (Scopus)

  17 Downloads (Pure)
• 2018

  A survey of virus recombination uncovers canonical features of artificial chimeras generated during deep sequencing library preparation

  Peccoud, J., Lequime, S., Moltini-Conclois, I., Giraud, I., Lambrechts, L. & Gilbert, C., 28-mrt.-2018, In: G3 : Genes, Genomes, Genetics. 8, 4, blz. 1129-1138 10 blz.

  Onderzoeksoutput › Academic › peer review
  14 Citaten (Scopus)

• Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics

  Fontaine, A., Lequime, S., Moltini-Conclois, I., Jiolle, D., Leparc-Goffart, I., Reiner, R. C. & Lambrechts, L., jul.-2018, In: PLoS Pathogens. 14, 7, e1007187.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  27 Citaten (Scopus)

  13 Downloads (Pure)
• 2017

  Discovery of flavivirus-derived endogenous viral elements in Anopheles mosquito genomes supports the existence of Anopheles-associated insect-specific flaviviruses

  Lequime, S. & Lambrechts, L., jan.-2017, In: Virus evolution. 3, 1, 8 blz., vew035.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  32 Citaten (Scopus)

  14 Downloads (Pure)

• Full-genome dengue virus sequencing in mosquito saliva shows lack of convergent positive selection during transmission by Aedes aegypti

  Lequime, S., Richard, V., Cao-Lormeau, V-M. & Lambrechts, L., jul.-2017, In: Virus evolution. 3, 2, vex031.

  Onderzoeksoutput › Academic › peer review

  Open Access

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  10 Downloads (Pure)
• 2016

  Determinants of arbovirus vertical transmission in mosquitoes

  Lequime, S., Paul, R. E. & Lambrechts, L., mei-2016, In: PLoS Pathogens. 12, 5, 14 blz., e1005548.

  Onderzoeksoutput › peer review

  Open Access

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  68 Citaten (Scopus)

  11 Downloads (Pure)

• Evolutionary dynamics of dengue virus populations within the mosquito vector

  Lambrechts, L. & Lequime, S., dec.-2016, In: Current opinion in virology. 21, blz. 47-53 7 blz.

  Onderzoeksoutput › peer review
  9 Citaten (Scopus)

• Excretion of dengue virus RNA by Aedes aegypti allows non-destructive monitoring of viral dissemination in individual mosquitoes

  Fontaine, A., Jiolle, D., Moltini-Conclois, I., Lequime, S. & Lambrechts, L., 27-apr.-2016, In: Scientific Reports. 6, 10 blz., 24885.

  Onderzoeksoutput › Academic › peer review

  Open Access

  Bestand
  42 Citaten (Scopus)

  130 Downloads (Pure)

• Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes

  Lequime, S., Fontaine, A., Ar Gouilh, M., Moltini-Conclois, I. & Lambrechts, L., jun.-2016, In: PLoS genetics. 12, 6, blz. e1006111

  Onderzoeksoutput › Academic › peer review

  Open Access

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  83 Citaten (Scopus)

  12 Downloads (Pure)
• 2014

  Vertical transmission of arboviruses in mosquitoes: A historical perspective

  Lequime, S. & Lambrechts, L., dec.-2014, In: Infection genetics and evolution. 28, blz. 681-90 10 blz.

  Onderzoeksoutput › peer review
  54 Citaten (Scopus)
• 2010

  Covering all bases in HIV research: Unveiling a hidden world of viral evolution

  Vrancken, B., Lequime, S., Theys, K. & Lemey, P., 24-jun.-2010, In: Aids reviews. 12, 2, blz. 89-102 14 blz.

  Onderzoeksoutput › peer review

  24 Citaten (Scopus)