Onderzoeksoutput per jaar
Onderzoeksoutput per jaar
- 47 resultaten
Zoekresultaten
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2025
detectEVE: Fast, sensitive and precise detection of endogenous viral elements in genomic data
Brait, N., Hackl, T. & Lequime, S., 12-feb.-2025, (E-pub ahead of print) In: Molecular Ecology Resources. 8 blz., e14083.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand5 Downloads (Pure) -
Distinct horizontal gene transfer potential of extracellular vesicles versus viral-like particles in marine habitats
Biller, S. J., Ryan, M. G., Li, J., Burger, A., Eppley, J. M., Hackl, T. & DeLong, E. F., 3-mrt.-2025, In: Nature Communications. 16, 1, 12 blz., 2126.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand2 Downloads (Pure) -
2024
A tale of caution: How endogenous viral elements affect virus discovery in transcriptomic data
Brait, N., Hackl, T., Morel, C., Exbrayat, A., Gutierrez, S. & Lequime, S., 8-feb.-2024, In: Virus Evolution. 10, 1, 28 blz., vead088.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand3 Citaten (Scopus)90 Downloads (Pure) -
Community context influences the conjugation efficiency of Escherichia coli
Bustamante, M., Koopman, F., Martens, J., Brons, J. K., DelaFuente, J., Hackl, T., Kuipers, O. P., van Doorn, G. S. & de Vos, M. G. J., 27-jul.-2024, In: FEMS Microbes. 5, xtae023.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand53 Downloads (Pure) -
detectEVE: Fast, sensitive and precise detection of endogenous viral elements in genomic data
Brait, N., Hackl, T. & Lequime, S., 8-sep.-2024, (Submitted) BioRxiv, 12 blz. (BioRxiv).Onderzoeksoutput: Voordruk › Academic
Bestand1 Downloads (Pure) -
Development of a genetic system for Haloferax gibbonsii LR2-5, model host for haloarchaeal viruses.
Tittes, C., Nijland, J., Schoentag, A. M. C., Hackl, T., Di Cianni, N., Marchfelder, A. & Quax, T. E. F., apr.-2024, In: Applied and environmental microbiology. 90, 4, 16 blz., e0012924.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand85 Downloads (Pure) -
Diverse rhizosphere-associated Pseudomonas genomes from along a Wadden Island salt marsh transition zone
Mei, S., Wang, M., Salles, J. F. & Hackl, T., dec.-2024, In: Scientific Data. 11, 1, 7 blz., 1140.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand28 Downloads (Pure) -
Endogenous virophages are active and mitigate giant virus infection in the marine protist Cafeteria burkhardae
Koslová, A., Hackl, T., Bade, F., Kasikovic, A. S., Barenhoff, K., Schimm, F., Mersdorf, U. & Fischer, M. G., 12-mrt.-2024, In: Proceedings of the National Academy of Sciences. 121, 11, 11 blz., e2314606121.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand6 Citaten (Scopus)87 Downloads (Pure) -
Genome sequencing and molecular networking analysis of the wild fungus Anthostomella pinea reveal its ability to produce a diverse range of secondary metabolites
Iacovelli, R., He, T., Allen, J. L., Hackl, T. & Haslinger, K., 3-jan.-2024, In: Fungal Biology and Biotechnology. 11, 1, 18 blz., 1.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand5 Citaten (Scopus)83 Downloads (Pure) -
Gggenomes: Effective and versatile visualizations for comparative genomics
Hackl, T., Ankenbrand, M., van Adrichem, B., Wilkins, D. & Haslinger, K., 1-nov.-2024, (Submitted) arXiv, 3 blz. (ArXiv).Onderzoeksoutput: Voordruk › Academic
Bestand20 Downloads (Pure) -
Novel isolates expand the physiological diversity of Prochlorococcus and illuminate its macroevolution
Becker, J. W., Pollak, S., Berta-Thompson, J. W., Becker, K. W., Braakman, R., Dooley, K. D., Hackl, T., Coe, A., Arellano, A., LeGault, K. N., Berube, P. M., Biller, S. J., Cubillos-Ruiz, A., Van Mooy, B. A. S. & Chisholm, S. W., 13-nov.-2024, In: mBio. 15, 11, 15 blz., e0349723.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand8 Downloads (Pure) -
2023
Archaeal host cell recognition and viral binding of HFTV1 to its Haloferax host
Schwarzer, S., Hackl, T., Oksanen, H. M. & Quax, T. E. F., 19-feb.-2023, In: mBio. 14, 1, 14 blz., e0183322.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand5 Citaten (Scopus)124 Downloads (Pure) -
A tale of caution: How endogenous viral elements affect virus discovery in transcriptomic data
Brait, N., Hackl, T., Morel, C., Exbrayat, A., Gutierrez, S. & Lequime, S., 8-sep.-2023, (Submitted) BioRxiv, 34 blz. (BioRxiv).Onderzoeksoutput: Voordruk › Academic
Bestand2 Downloads (Pure) -
Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle
Capovilla, G., Braakman, R., Fournier, G. P., Hackl, T., Schwartzman, J., Lu, X., Yelton, A., Longnecker, K., Soule, M. C. K., Thomas, E., Swarr, G., Mongera, A., Payette, J. G., Castro, K. G., Waldbauer, J., Kujawinski, E. B., Cordero, O. & Chisholm, S. W. C. O. P., 16-mei-2023, In: Proceedings of the National Academy of Sciences. 120, 20, e2213271120.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand6 Citaten (Scopus)120 Downloads (Pure) -
Community coalescence altered the potential of horizontal gene transfers within the native soil microbiome
Liu, X., Hackl, T. & Salles, J. F., 18-sep.-2023, (Submitted) BioRxiv, 34 blz.Onderzoeksoutput: Voordruk › Academic
Bestand27 Downloads (Pure) -
Diverse rhizosphere-associated Pseudomonas genomes isolated along the marine-terrestrial transition zone of a Wadden island salt march
Mei, S., Wang, M., Salles, J. F. & Hackl, T., 16-nov.-2023, (Submitted) BioRxiv, 10 blz.Onderzoeksoutput: Voordruk › Academic
Bestand42 Downloads (Pure) -
Draft genomes of three closely related low light-adapted Prochlorococcus
Berta-Thompson, J. W., Thomas, E., Cubillos-Ruiz, A., Hackl, T., Becker, J. W., Coe, A., Biller, S. J., Berube, P. M. & Chisholm, S. W., 24-feb.-2023, In: BMC genomic data. 24, 1, blz. 11 11.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand67 Downloads (Pure) -
Genomic and metabolomic analysis of the endophytic fungus Fusarium sp. VM-40 isolated from the medicinal plant Vinca minor
He, T., Li, X., Iacovelli, R., Hackl, T. & Haslinger, K., 27-jun.-2023, In: Journal of fungi (Basel, Switzerland). 9, 7, 26 blz., 704.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand4 Citaten (Scopus)111 Downloads (Pure) -
Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses
Bellas, C., Hackl, T., Plakolb, M.-S., (Lounkova), K., Fischer, M. & Sommaruga, R., 18-apr.-2023, In: Proceedings of the National Academy of Sciences. 120, 16, 10 blz., e2300465120.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand26 Citaten (Scopus)154 Downloads (Pure) -
Novel and unusual genes for nitrogen and metal cycling in Planctomycetota- and KSB1-affiliated metagenome-assembled genomes reconstructed from a marine subsea tunnel
Suarez, C., Hackl, T., Wilen, B.-M., Persson, F., Hagelia, P., Jetten, M. S. M. & Dalcin Martins, P., 8-jun.-2023, In: FEMS Microbiology Letters. 370, blz. 1-10 10 blz., fnad049.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand9 Citaten (Scopus)51 Downloads (Pure) -
Novel integrative elements and genomic plasticity in ocean ecosystems
Hackl, T., Laurenceau, R., Ankenbrand, M. J., Bliem, C., Cariani, Z., Thomas, E., Dooley, K. D., Arellano, A. A., Hogle, S. L., Berube, P., Leventhal, G. E., Luo, E., Eppley, J. M., Zayed, A. A., Beaulaurier, J., Stepanauskas, R., Sullivan, M. B., DeLong, E. F., Biller, S. J. & Chisholm, S. W., 5-jan.-2023, In: Cell. 186, 1, blz. 47-62.e16Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand35 Citaten (Scopus)293 Downloads (Pure) -
Novel isolates expand the physiological diversity of Prochlorococcus and illuminate its macroevolution
Becker, J., Pollak, S., Berta-Thompson, J. W., Becker, K. W., Braakman, R., Dooley, K. D., Hackl, T., Coe, A., Arellano, A., LeGault, K. N., Berube, P. M., Biller, S. J., Cubillos-Ruiz, A., Mooy, B. A. S. V. & Chisholm, S. W., 3-dec.-2023, (Submitted) BioRxiv, 50 blz.Onderzoeksoutput: Voordruk › Academic
23 Downloads (Pure) -
Updated virophage taxonomy and distinction from polinton-like viruses
Roux, S., Fischer, M., Hackl, T., Katz, L. A., Schulz, F. & Yutin, N., jan.-2023, In: Biomolecules. 13, 2, 21 blz., 204.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand19 Citaten (Scopus)103 Downloads (Pure) -
2022
Genetic engineering of marine cyanophages reveals integration but not lysogeny in T7-like cyanophages
Shitrit, D., Hackl, T., Laurenceau, R., Raho, N., Carlson, M. C. G., Sabehi, G., Schwartz, D. A., Chisholm, S. W. & Lindell, D., feb.-2022, In: ISME Journal. 16, 2, blz. 488-499 12 blz.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand24 Citaten (Scopus)31 Downloads (Pure) -
Phosphonate production by marine microbes: Exploring new sources and potential function
Acker, M., Hogle, S. L., Berube, P. M., Hackl, T., Coe, A., Stepanauskas, R., Chisholm, S. W. & Repeta, D. J., 15-mrt.-2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 11, 12 blz., 2113386119.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand38 Citaten (Scopus)22 Downloads (Pure) -
Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean
Hogle, S. L., Hackl, T., Bundy, R. M., Park, J., Satinsky, B., Hiltunen, T., Biller, S., Berube, P. M. & Chisholm, S. W., jun.-2022, In: ISME Journal. 16, blz. 1636–1646 11 blz.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand24 Citaten (Scopus)79 Downloads (Pure) -
2021
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate
Massana, R., Labarre, A., Lopez-Escardo, D., Obiol, A., Bucchini, F., Hackl, T., Fischer, M. G., Vandepoele, K., Tikhonenkov, D. V., Husnik, F. & Keeling, P. J., jan.-2021, In: ISME Journal. 15, 1, blz. 154-167 14 blz.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand13 Citaten (Scopus)8 Downloads (Pure) -
MOSGA 2: Comparative genomics and validation tools
Martin, R., Dressler, H., Hattab, G., Hackl, T., Fischer, M. G. & Heider, D., 2021, In: Computational and Structural Biotechnology Journal. 19, blz. 5504-5509 6 blz.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand7 Citaten (Scopus)726 Downloads (Pure) -
proovframe: frameshift-correction for long-read (meta)genomics
Hackl, T., Trigodet, F., Murat Eren, A., Biller, S. J., Eppley, J. M., Luo, E., Burger, A., DeLong, E. F. & Fischer, M. G., 24-aug.-2021, (Submitted) BioRxiv, 15 blz.Onderzoeksoutput: Voordruk › Academic
Bestand103 Downloads (Pure) -
Rapid in vitro prototyping of O-methyltransferases for pathway applications in Escherichia coli
Hackl, T., Haslinger, K. & Prather, K. L. J., 17-jun.-2021, BioRxiv, 31 blz. (BioRxiv).Onderzoeksoutput: Voordruk › Academic
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Virophages and retrotransposons colonize the genomes of a heterotrophic flagellate
Hackl, T., Duponchel, S., Barenhoff, K., Weinmann, A. & Fischer, M. G., 26-okt.-2021, In: eLife. 10, 20 blz., 72674.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand33 Citaten (Scopus)42 Downloads (Pure) -
2020
Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis
Hackl, T., Martin, R., Barenhoff, K., Duponchel, S., Heider, D. & Fischer, M. G., 21-jan.-2020, In: Scientific Data. 7, 1, 9 blz., 29.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand16 Citaten (Scopus)10 Downloads (Pure) -
Genomes of the Venus flytrap and close relatives unveil the roots of plant carnivory
Palfalvi, G., Hackl, T., Terhoeven, N., Shibata, T. F., Nishiyama, T., Ankenbrand, M., Becker, D., Foerster, F., Freund, M., Iosip, A., Kreuzer, I., Saul, F., Kamida, C., Fukushima, K., Shigenobu, S., Tamada, Y., Adamec, L., Hoshi, Y., Ueda, K. & Winkelmann, T. & 7 anderen, , 22-jun.-2020, In: Current Biology. 30, 12, blz. 2312-2320.e5 14 blz.Onderzoeksoutput: Article › Academic › peer review
Open AccessBestand58 Citaten (Scopus)31 Downloads (Pure) -
MOSGA: Modular Open-Source Genome Annotator
Martin, R., Hackl, T., Hattab, G., Fischer, M. G. & Heider, D., 1-dec.-2020, In: Bioinformatics. 36, 22-23, blz. 5514-5515 2 blz.Onderzoeksoutput: Article › Academic › peer review
11 Citaten (Scopus) -
Visualization of giant virus particles using BONCAT labeling and STED microscopy
Berjón-Otero, M., Duponchel, S., Hackl, T. & Fischer, M. G., 14-jul.-2020, (Submitted) BioRxiv, (BioRxiv).Onderzoeksoutput: Voordruk › Academic
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2019
Publisher Correction: Marine microbial metagenomes sampled across space and time
Biller, S. J., Berube, P. M., Dooley, K., Williams, M., Satinsky, B. M., Hackl, T., Hogle, S. L., Coe, A., Bergauer, K., Bouman, H. A., Browning, T. J., Corte, D. D., Hassler, C., Hulston, D., Jacquot, J. E., Maas, E. W., Reinthaler, T., Sintes, E., Yokokawa, T. & Chisholm, S. W., 1-dec.-2019, In: Scientific Data. 6, 1, 47.Onderzoeksoutput
Open Access1 Citaat (Scopus) -
2018
chloroExtractor: Extraction and assembly of the chloroplast genome from whole genome shotgun data
Ankenbrand, M. J., Pfaff, S., Terhoeven, N., Qureischi, M., Gündel, M., Weiß, C. L., Hackl, T. & Förster, F., 16-jan.-2018, In: The Journal of Open Source Software. 3, 21, 3 blz., 464.Onderzoeksoutput: Article › Academic › peer review
Open Access -
Improving draft genome contiguity with reference-derived in silico mate-pair libraries
Grau, J. H., Hackl, T., Koepfli, K. P. & Hofreiter, M., 21-apr.-2018, In: Gigascience. 7, 5, 6 blz., giy029.Onderzoeksoutput: Article › Academic › peer review
Open Access18 Citaten (Scopus) -
Marine microbial metagenomes sampled across space and time
Biller, S. J., Berube, P. M., Dooley, K., Williams, M., Satinsky, B. M., Hackl, T., Hogle, S. L., Coe, A., Bergauer, K., Bouman, H. A., Browning, T. J., De Corte, D., Hassler, C., Hulston, D., Jacquot, J. E., Maas, E. W., Reinthaler, T., Sintes, E., Yokokawa, T. & Chisholm, S. W., 2018, In: Scientific Data. 5, 7 blz., 180176.Onderzoeksoutput: Article › Academic › peer review
Open Access127 Citaten (Scopus) -
reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome
Terhoeven, N., Schultz, J. & Hackl, T., 8-feb.-2018, In: The Journal of Open Source Software. 3, 22, 4 blz., 527.Onderzoeksoutput: Article › Academic › peer review
Open Access -
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
Berube, P. M., Biller, S. J., Hackl, T., Hogle, S. L., Satinsky, B. M., Becker, J. W., Braakman, R., Collins, S. B., Kelly, L., Berta-Thompson, J., Coe, A., Bergauer, K., Bouman, H. A., Browning, T. J., De Corte, D., Hassler, C., Hulata, Y., Jacquot, J. E., Maas, E. W. & Reinthaler, T. & 5 anderen, , 2018, In: Scientific Data. 5, 11 blz., 180154.Onderzoeksoutput: Article › Academic › peer review
Open Access61 Citaten (Scopus) -
2017
AliTV-interactive visualization of whole genome comparisons
Ankenbrand, M. J., Hohlfeld, S., Hackl, T. & Foerster, F., 12-jun.-2017, In: Peerj computer science. 3, 10 blz., 116.Onderzoeksoutput: Article › Academic › peer review
61 Citaten (Scopus) -
Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
Slaby, B. M., Hackl, T., Horn, H., Bayer, K. & Hentschel, U., 1-nov.-2017, In: ISME Journal. 11, 11, blz. 2465-2478 14 blz.Onderzoeksoutput: Article › Academic › peer review
Open Access114 Citaten (Scopus) -
2016
Host genome integration and giant virus-induced reactivation of the virophage mavirus
Fischer, M. G. & Hackl, T., 7-dec.-2016, In: Nature. 540, 7632, blz. 288-291 4 blz.Onderzoeksoutput: Article › Academic › peer review
102 Citaten (Scopus) -
2014
proovread: Large-scale high-accuracy PacBio correction through iterative short read consensus
Hackl, T., Hedrich, R., Schultz, J. & Förster, F., 28-mei-2014, In: Bioinformatics. 30, 21, blz. 3004-3011 8 blz.Onderzoeksoutput: Article › Academic › peer review
375 Citaten (Scopus) -
2012
ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies
Koetschan, C., Hackl, T., Müller, T., Wolf, M., Förster, F. & Schultz, J., jun.-2012, In: Molecular Phylogenetics and Evolution. 63, 3, blz. 585-588 4 blz.Onderzoeksoutput: Article › Academic › peer review
132 Citaten (Scopus) -
The ITS2 Database
Merget, B., Koetschan, C., Hackl, T., Förster, F., Dandekar, T., Müller, T., Schultz, J. & Wolf, M., 12-mrt.-2012, In: Journal of visualized experiments : JoVE. 61, 5 blz., e3806 |.Onderzoeksoutput: Article › Academic › peer review
Open Access55 Citaten (Scopus)