Thomas Jansen

Zoekresultaten

• 2023

  An efficient time-domain implementation of the multichromophoric Förster resonant energy transfer method

  Zhong, K., Nguyen, H. L., Do, T. N., Tan, H. S., Knoester, J. & Jansen, T. L. C., 28-feb.-2023, In: Journal of Chemical Physics. 158, 6, blz. 1710–1722 13 blz.

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• Manifestation of Hydrogen Bonding and Exciton Delocalization on the Absorption and Two-Dimensional Electronic Spectra of Chlorosomes

  Erić, V., Li, X., Dsouza, L., Frehan, S. K., Huijser, A., Holzwarth, A. R., Buda, F., Sevink, G. J. A., de Groot, H. J. M. & Jansen, T. L. C., 9-feb.-2023, In: Journal of Physical Chemistry B. 127, 5, blz. 1097-1109 13 blz.

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• Simulation of two-dimensional infrared Raman spectroscopy with application to proteins

  Van Hengel, C. D. N., Van Adrichem, K. E. & Jansen, T. L. C., 14-feb.-2023, In: Journal of Chemical Physics. 158, 6, 8 blz., 064106.

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• 2022

  AIM: A Mapping Program for Infrared Spectroscopy of Proteins

  Adrichem, K. E. V. & Jansen, T. L. C., 7-apr.-2022, In: Journal of Chemical Theory and Computation. 18, 5, blz. 3089–3098 10 blz.

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  6 Citaten (Scopus)

  34 Downloads (Pure)

• Distinguishing islet amyloid polypeptide fibril structures with infrared isotope-label spectroscopy

  Saxena, V., Steendam, R. & Jansen, T. L. C., 2-feb.-2022, In: The Journal of Chemical Physics. 156, 5, 12 blz., 055101.

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  4 Citaten (Scopus)

  28 Downloads (Pure)

• Optical signatures of the coupling between excitons and charge transfer states in linear molecular aggregates

  Manrho, M., Jansen, T. L. C. & Knoester, J., 14-jun.-2022, In: Journal of Chemical Physics. 156, 22, 13 blz., 224112.

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• Structural Disorder as the Origin of Optical Properties and Spectral Dynamics in Squaraine Nano-Aggregates

  Bernhardt, R., Manrho, M., Zablocki, J., Rieland, L., Lützen, A., Schiek, M., Meerholz, K., Zhu, J., Jansen, T. L. C., Knoester, J. & Van Loosdrecht, P. H. M., 26-okt.-2022, In: Journal of the American Chemical Society. 144, 42, blz. 19372–19381 10 blz.

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• The effect of caesium alloying on the ultrafast structural dynamics of hybrid organic-inorganic halide perovskites

  Gallop, N. P., Ye, J., Greetham, G. M., Jansen, T. L. C., Dai, L., Zelewski, S. J., Arul, R., Baumberg, J. J., Hoye, R. L. Z. & Bakulin, A. A., 4-okt.-2022, In: Journal of Materials Chemistry A. 10, 42, blz. 22408-22418 11 blz.

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• Ultrafast Excitation Energy Transfer Dynamics in the LHCII–CP29–CP24 Subdomain of Plant Photosystem II

  Nhut, T., Nguyen, H. L., Akhtar, P., Zhong, K., Jansen, T. L. C., Knoester, J., Caffarri, S., Lambrev, P. H. & Tan, H-S., 19-mei-2022, In: The Journal of Physical Chemistry Letters. 13, 19, blz. 4263–4271 9 blz.

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  2 Citaten (Scopus)

  42 Downloads (Pure)
• 2021

  An Exciton Dynamics Model of Bryopsis corticulans Light-Harvesting Complex II

  Nguyen, H. L., Do, T. N., Akhtar, P., Jansen, T. L. C., Knoester, J., Wang, W., Shen, J-R., Lambrev, P. H. & Tan, H-S., 4-feb.-2021, In: Journal of Physical Chemistry B. 125, 4, blz. 1134-1143 10 blz.

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  4 Citaten (Scopus)

  79 Downloads (Pure)

• Computational spectroscopy of complex systems

  Jansen, T. L. C., 7-nov.-2021, In: Journal of Chemical Physics. 155, 17, 17 blz., 170901.

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  17 Citaten (Scopus)

  45 Downloads (Pure)

• Lessons from combined experimental and theoretical examination of the FTIR and 2D-IR spectroelectrochemistry of the amide I region of cytochrome c

  El Khoury, Y., Le Breton, G., Cunha, A. V., Jansen, T. L. C., van Wilderen, L. J. G. W. & Bredenbeck, J., 28-mrt.-2021, In: Journal of Chemical Physics. 154, 12, 12 blz., 124201.

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  7 Citaten (Scopus)

  36 Downloads (Pure)

• Probing size variations of molecular aggregates inside chlorosomes using single-object spectroscopy

  Kunsel, T., Günther, L. M., Köhler, J., Jansen, T. L. C. & Knoester, J., 28-sep.-2021, In: Journal of Chemical Physics. 155, 12, 14 blz., 124310.

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  1 Citaat (Scopus)

  11 Downloads (Pure)

• Quantum-Classical Simulation of Molecular Motors Driven Only by Light

  Majumdar, A. & Jansen, T. L. C., 17-jun.-2021, In: JOURNAL OF PHYSICAL CHEMISTRY LETTERS. 12, 23, blz. 5512-5518 7 blz.

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  4 Citaten (Scopus)

  79 Downloads (Pure)

• Scaling relations of exciton diffusion in linear aggregates with static and dynamic disorder

  Kunsel, T., Jansen, T. L. C. & Knoester, J., 7-okt.-2021, In: Journal of Chemical Physics. 155, 13, 13 blz., 134305.

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  2 Citaten (Scopus)

  39 Downloads (Pure)
• 2020

  Comparison of methods to study excitation energy transfer in molecular multichromophoric systems

  Bondarenko, A. S., Knoester, J. & Jansen, T. L. C., 15-jan.-2020, In: Chemical Physics. 529, 12 blz., 110478.

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  13 Citaten (Scopus)

  143 Downloads (Pure)

• Excited state dynamics and exciton diffusion in triphenylamine/dicyanovinyl push-pull small molecule for organic optoelectronics

  Raul, B. A. L., Luponosov, Y. N., Yang, W., Surin, N. M., Douheret, O., Min, J., Jansen, T. L. C., Ponomarenko, S. A. & Pshenichnikov, M. S., 3-dec.-2020, In: Scientific Reports. 10, 1, 10 blz., 21198.

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  7 Citaten (Scopus)

  54 Downloads (Pure)

• Exciton localization in tubular molecular aggregates: Size effects and optical response

  Bondarenko, A. S., Jansen, T. L. C. & Knoester, J., 21-mei-2020, In: Journal of Chemical Physics. 152, 19, 12 blz., 194302.

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  9 Citaten (Scopus)

  164 Downloads (Pure)

• Molecular versus excitonic disorder in individual artificial light-harvesting systems

  Kriete, B., Bondarenko, A. S., Alessandri, R., Patmanidis, I., Krasnikov, V. V., Jansen, T. L. C., Marrink, S. J., Knoester, J. & Pshenichnikov, M. S., 21-okt.-2020, In: Journal of the American Chemical Society. 142, 42, blz. 18073-18085 13 blz., jacs.0c07392.

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  7 Citaten (Scopus)

  123 Downloads (Pure)

• Multiscale modeling of molecular structure and optical properties of complex supramolecular aggregates

  Bondarenko, A. S., Patmanidis, I., Alessandri, R., Souza, P. C. T., Jansen, T. L. C., de Vries, A. H., Marrink, S. J. & Knoester, J., 14-nov.-2020, In: Chemical Science. 11, 42, blz. 11514-11524 11 blz.

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  13 Citaten (Scopus)

  75 Downloads (Pure)

• Observation of Ultrafast Coherence Transfer and Degenerate States with Polarization-Controlled Two-Dimensional Electronic Spectroscopy

  Sardjan, A. S., Westerman, F. P., Ogilvie, J. P. & Jansen, T. L. C., 22-okt.-2020, In: Journal of Physical Chemistry B. 124, 42, blz. 9420-9427 8 blz.

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  10 Citaten (Scopus)

  87 Downloads (Pure)

• Quantum biology revisited

  Cao, J., Cogdell, R. J., Coker, D. F., Duan, H-G., Hauer, J., Kleinekathoefer, U., Jansen, T. L. C., Mancal, T., Miller, R. J. D., Ogilvie, J. P., Prokhorenko, V., Renger, T., Tan, H-S., Tempelaar, R., Thorwart, M., Thyrhaug, E., Westenhoff, S. & Zigmantas, D., 1-apr.-2020, In: Science Advances. 6, 14, 11 blz., eaaz4888.

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  191 Citaten (Scopus)

  119 Downloads (Pure)

• Unraveling intra-aggregate structural disorder using single-molecule spectroscopy

  Kunsel, T., Loehner, A., Mayo, J. J., Koehler, J., Jansen, T. L. C. & Knoester, J., 7-okt.-2020, In: Journal of Chemical Physics. 153, 13, 12 blz., 134304.

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  3 Citaten (Scopus)

  103 Downloads (Pure)

• Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction

  Baiz, C. R., Blasiak, B., Bredenbeck, J., Cho, M., Choi, J-H., Corcelli, S. A., Dijkstra, A. G., Feng, C-J., Garrett-Roe, S., Ge, N-H., Hanson-Heine, M. W. D., Hirst, J. D., Jansen, T. L. C., Kwac, K., Kubarych, K. J., Londergan, C. H., Maekawa, H., Reppert, M., Saito, S., Roy, S., & 10 anderenSkinner, J. L., Stock, G., Straub, J. E., Thielges, M. C., Tominaga, K., Tokmakoff, A., Torii, H., Wang, L., Webb, L. J. & Zanni, M. T., 12-aug.-2020, In: Chemical reviews. 120, 15, blz. 7152-7218 67 blz.

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  136 Citaten (Scopus)

  184 Downloads (Pure)
• 2019

  Interplay between structural hierarchy and exciton diffusion in artificial light harvesting

  Kriete, B., Luettig, J., Kunsel, T., Maly, P., Jansen, T. L. C., Knoester, J., Brixner, T. & Pshenichnikov, M. S., 10-okt.-2019, In: Nature Communications. 10, 11 blz., 4615.

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  33 Citaten (Scopus)

  154 Downloads (Pure)

• Simulating Fluorescence-Detected Two-Dimensional Electronic Spectroscopy of Multichromophoric Systems

  Kunsel, T., Tiwari, V., Matutes, Y. A., Gardiner, A. T., Cogdell, R. J., Ogilvie, J. P. & Jansen, T. L. C., 17-jan.-2019, In: Journal of Physical Chemistry B. 123, 2, blz. 394-406 13 blz.

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  20 Citaten (Scopus)

  277 Downloads (Pure)

• Spectral and Structural Variations of Biomimetic Light-Harvesting Nanotubes

  Loehner, A., Kunsel, T., Roehr, M. I. S., Jansen, T. L. C., Sengupta, S., Wuerthner, F., Knoester, J. & Koehler, J., 6-jun.-2019, In: JOURNAL OF PHYSICAL CHEMISTRY LETTERS. 10, 11, blz. 2715-2724 19 blz.

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  17 Citaten (Scopus)

  62 Downloads (Pure)

• Theory of coherent two-dimensional vibrational spectroscopy

  Jansen, T. L. C., Saito, S., Jeon, J. & Cho, M., 14-mrt.-2019, In: Journal of Chemical Physics. 150, 10, 17 blz., 100901.

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  31 Citaten (Scopus)

  136 Downloads (Pure)

• Tunable Ferroelectricity in Ruddlesden-Popper Halide Perovskites

  Zhang, Q., Solanki, A., Parida, K., Giovanni, D., Li, M., Jansen, T. L. C., Pshenichnikov, M. S. & Sum, T. C., 10-apr.-2019, In: ACS Applied Materials & Interfaces. 11, 14, blz. 13523-13532 10 blz.

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  25 Citaten (Scopus)

  164 Downloads (Pure)

• Unraveling Molecular Packing in Two-Dimensional Excitonic Systems

  Jansen, T. L. C., 12-dec.-2019, In: Chem. 5, 12, blz. 3010-3012 4 blz.

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  1 Citaat (Scopus)

  3 Downloads (Pure)
• 2018

  Direct knock-on of desolvated ions governs strict ion selectivity in K+ channels

  Kopec, W., Koepfer, D. A., Vickery, O. N., Bondarenko, A. S., Jansen, T. L. C., de Groot, B. L. & Zachariae, U., 20-jul.-2018, In: Nature Chemistry. 10, 8, blz. 813-820 8 blz.

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  111 Citaten (Scopus)

  6 Downloads (Pure)

• Hydrophobic Collapse in N-Methylacetamide Water Mixtures

  Salamatova, E., Cunha, A. V., Bloem, R., Roeters, S. J., Woutersen, S., Jansen, T. L. C. & Pshenichnikov, M. S., 8-mrt.-2018, In: The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory. 122, 9, blz. 2468-2478 11 blz.

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  21 Citaten (Scopus)

  152 Downloads (Pure)

• Identification and characterization of diverse coherences in the Fenna-Matthews-Olson complex

  Thyrhaug, E., Tempelaar, R., Alcocer, M. J. P., Zidek, K., Bina, D., Knoester, J., Jansen, T. L. C. & Zigmantas, D., jul.-2018, In: Nature Chemistry. 10, 7, blz. 780-786 7 blz.

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  144 Citaten (Scopus)

  106 Downloads (Pure)

• Rotational Cation Dynamics in Metal Halide Perovskites: Effect on Phonons and Material Properties

  Gallop, N. P., Selig, O., Giubertoni, G., Bakker, H. J., Rezus, Y. L. A., Frost, J. M., Jansen, T. L. C., Lovrincic, R. & Bakulin, A. A., 18-okt.-2018, In: JOURNAL OF PHYSICAL CHEMISTRY LETTERS. 9, 20, blz. 5987-5997 21 blz.

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  55 Citaten (Scopus)

  70 Downloads (Pure)

• Simple Quantum Dynamics with Thermalization

  Jansen, T. L. C., 11-jan.-2018, In: The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory. 122, 1, blz. 172-183 12 blz.

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  8 Citaten (Scopus)

  313 Downloads (Pure)

• Soft X-ray spectroscopy as a probe for gas-phase protein structure: Electron impact ionization from within

  Bari, S., Egorov, D., Jansen, T. L. C., Boll, R., Hoekstra, R., Techert, S., Zamudio-bayer, V., Bülow, C., Lindblad, R., Leistner, G., Ławicki, A., Hirsch, K., Miedema, P. S., Von Issendorf, B., Lau, T. & Schlathölter, T., 28-mei-2018, In: Chemistry. 24, 30, blz. 7631-7636

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  18 Citaten (Scopus)

  478 Downloads (Pure)

• Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria

  Tiwari, V., Matutes, Y. A., Gardiner, A. T., Jansen, T. L. C., Cogdell, R. J. & Ogilvie, J. P., 11-okt.-2018, In: Nature Communications. 9, 10 blz., 4219.

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  69 Citaten (Scopus)

  322 Downloads (Pure)

• Structural Variations in Chlorosomes from Wild-Type and a bchQR Mutant of Chlorobaculum tepidum Revealed by Single-Molecule Spectroscopy

  Guenther, L. M., Loehner, A., Reiher, C., Kunsel, T., Jansen, T. L. C., Tank, M., Bryant, D. A., Knoester, J. & Koehler, J., 5-jul.-2018, In: Journal of Physical Chemistry B. 122, 26, blz. 6712-6723 12 blz.

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  48 Downloads (Pure)

• Temperature-Induced Collapse of Elastin-like Peptides Studied by 2DIR Spectroscopy

  Selig, O., Cunha, A. V., van Eldijk, M. B., van Hest, J. C. M., Jansen, T. L. C., Bakker, H. J. & Rezus, Y. L. A., 30-aug.-2018, In: Journal of Physical Chemistry B. 122, 34, blz. 8243-8254 12 blz.

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  11 Citaten (Scopus)

  336 Downloads (Pure)

• The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin

  Farag, M. H., Jansen, T. L. C. & Knoester, J., 14-mei-2018, In: PPCP : Physical Chemistry Chemical Physics. 20, 18, blz. 12746-12754 9 blz.

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  18 Downloads (Pure)
• 2017

  2D IR spectroscopy of high-pressure phases of ice

  Tran, H., Cunha, A. V., Shephard, J. J., Shalit, A., Hamm, P., Jansen, T. L. C. & Salzmann, C. G., 14-okt.-2017, In: Journal of Chemical Physics. 147, 14, 11 blz., 144501 - 144511.

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  12 Citaten (Scopus)

  281 Downloads (Pure)

• Exciton-Exciton Annihilation Is Coherently Suppressed in H-Aggregates, but Not in J-Aggregates

  Tempelaar, R., Jansen, T. L. C. & Knoester, J., 21-dec.-2017, In: The Journal of Physical Chemistry Letters. 8, 24, blz. 6113-6117 5 blz.

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  35 Citaten (Scopus)

  341 Downloads (Pure)

• Hydrogen bond and lifetime dynamics in diluted alcohols

  Salamatova, E., Cunha, A. V., Shinokita, K., Jansen, T. L. C. & Pshenichnikov, M. S., 7-nov.-2017, In: PPCP : Physical Chemistry Chemical Physics. 19, 41, blz. 27960-27967 8 blz.

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  7 Citaten (Scopus)

  44 Downloads (Pure)

• Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide

  Cunha, A. V., Salamatova, E., Bloem, R., Roeters, S. J., Woutersen, S., Pshenichnikov, M. S. & Jansen, T. L. C., 1-jun.-2017, In: The Journal of Physical Chemistry Letters. 8, 11, blz. 2438-2444 7 blz.

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  258 Downloads (Pure)

• Organic Cation Rotation and Immobilization in Pure and Mixed Methylammonium Lead-Halide Perovskites

  Selig, O., Sadhanala, A., Muller, C., Lovrincic, R., Chen, Z., Rezus, Y. L. A., Frost, J. M., Jansen, T. L. C. & Bakulin, A. A., 22-mrt.-2017, In: Journal of the American Chemical Society. 139, 11, blz. 4068-4074 7 blz.

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  25 Downloads (Pure)

• Spectral line shapes in linear absorption and two-dimensional spectroscopy with skewed frequency distributions

  Farag, M. H., Hoenders, B. J., Knoester, J. & Jansen, T. L. C., 21-jun.-2017, In: Journal of Chemical Physics. 146, 23, 9 blz., 234201.

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  368 Downloads (Pure)

• Steering Self-Assembly of Amphiphilic Molecular Nanostructures via Halogen Exchange

  Kriete, B., Bondarenko, A. S., Jumde, V. R., Franken, L. E., Minnaard, A. J., Jansen, T. L. C., Knoester, J. & Pshenichnikov, M. S., 6-jul.-2017, In: The Journal of Physical Chemistry Letters. 8, 13, blz. 2895-2901 7 blz.

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  400 Downloads (Pure)

• Structural and Spectroscopic Properties of Assemblies of Self-Replicating Peptide Macrocycles

  Frederix, P. W. J. M., Idé, J., Altay, Y., Schaeffer, G., Surin, M., Beljonne, D., Bondarenko, A. S., Jansen, T. L. C., Otto, S. & Marrink, S. J., 19-jul.-2017, In: Acs Nano. 11, 8, blz. 7858-7868 11 blz.

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  393 Downloads (Pure)

• The Primary Photochemistry of Vision Occurs at the Molecular Speed Limit

  Johnson, P. J. M., Farag, M. H., Halpin, A., Morizumi, T., Prokhorenko, V. I., Knoester, J., Jansen, T. L. C., Ernst, O. P. & Miller, R. J. D., 27-apr.-2017, In: The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical. 121, 16, blz. 4040-4047 8 blz.

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  172 Downloads (Pure)
• 2016

  Assessing Spectral Simulation Protocols for the Amide I Band of Proteins

  Cunha, A. V., Bondarenko, A. S. & Jansen, T. L. C., aug.-2016, In: Journal of Chemical Theory and Computation. 12, 8, blz. 3982-3992 11 blz.

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  28 Citaten (Scopus)

  7 Downloads (Pure)