A Multi-Scale Approach to Membrane Remodeling Processes

Weria Pezeshkian, Melanie König, Siewert J Marrink, John H Ipsen*

*Bijbehorende auteur voor dit werk

OnderzoeksoutputAcademicpeer review

5 Citaten (Scopus)
161 Downloads (Pure)

Samenvatting

We present a multi-scale simulation procedure to describe membrane-related biological processes that span over a wide range of length scales. At macroscopic length-scale, a membrane is described as a flexible thin film modeled by a dynamic triangulated surface with its spatial conformations governed by an elastic energy containing only a few model parameters. An implicit protein model allows us to include complex effects of membrane-protein interactions in the macroscopic description. The gist of this multi-scale approach is a scheme to calibrate the implicit protein model using finer scale simulation techniques e.g., all atom and coarse grain molecular dynamics. We previously used this approach and properly described the formation of membrane tubular invaginations upon binding of B-subunit of Shiga toxin. Here, we provide a perspective of our multi-scale approach, summarizing its main features and sketching possible routes for future development.

Originele taal-2English
Artikelnummer59
Aantal pagina's7
TijdschriftFrontiers in Molecular Biosciences
Volume6
DOI's
StatusPublished - 23-jul-2019

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