TY - JOUR
T1 - The COMPARE Data Hubs
AU - Amid, Clara
AU - Pakseresht, Nima
AU - Silvester, Nicole
AU - Jayathilaka, Suran
AU - Lund, Ole
AU - Dynovski, Lukasz D.
AU - Pataki, Bálint
AU - Visontai, Dávid
AU - Xavier, Basil Britto
AU - Alako, Blaise T.F.
AU - Belka, Ariane
AU - Cisneros, Jose L.B.
AU - Cotten, Matthew
AU - Haringhuizen, George B.
AU - Harrison, Peter W.
AU - Höper, Dirk
AU - Holt, Sam
AU - Hundahl, Camilla
AU - Hussein, Abdulrahman
AU - Kaas, Rolf S.
AU - Liu, Xin
AU - Leinonen, Rasko
AU - Malhotra-Kumar, Surbhi
AU - Nieuwenhuijse, David F.
AU - Rahman, Nadim
AU - Dos S Ribeiro, Carolina
AU - Skiby, Jeffrey E.
AU - Schmitz, Dennis
AU - Stéger, József
AU - Szalai-Gindl, János M.
AU - Thomsen, Martin C.F.
AU - Cacciò, Simone M.
AU - Csabai, István
AU - Kroneman, Annelies
AU - Koopmans, Marion
AU - Aarestrup, Frank
AU - Cochrane, Guy
N1 - Publisher Copyright:
© The Author(s) 2019. Published by Oxford University Press.
PY - 2019/1/1
Y1 - 2019/1/1
N2 - Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, regulatory and institutional challenges, as well as lack of suitable platforms which provide an infrastructure for data sharing in structured formats, often lead to data not being shared or at most shared in form of supplementary materials in journal publications. Here, we describe an informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders.
AB - Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, regulatory and institutional challenges, as well as lack of suitable platforms which provide an infrastructure for data sharing in structured formats, often lead to data not being shared or at most shared in form of supplementary materials in journal publications. Here, we describe an informatics platform that includes workflows for structured data storage, managing and pre-publication sharing of pathogen sequencing data and its analysis interpretations with relevant stakeholders.
KW - data hubs
KW - data sharing platform
KW - FAIR principles
KW - pathogen portal
KW - pathogen sequencing data
UR - https://www.scopus.com/pages/publications/85077143009
U2 - 10.1093/database/baz136
DO - 10.1093/database/baz136
M3 - Article
C2 - 31868882
SN - 1758-0463
VL - 2019
JO - Database : the journal of biological databases and curation
JF - Database : the journal of biological databases and curation
M1 - baz136
ER -