Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Dive into the research topics where Marc Jan Bonder is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes
Human Genome Structural Variation Consortium (HGSVC), HGSVC Functional Analysis Working Group, Li, C., Bonder, M. J., Syed, S., Jensen, M., Gerstein, M. B., Zody, M. C., Chaisson, M. J. P., Talkowski, M. E., Marschall, T., Korbel, J. O., Eichler, E. E., Lee, C. & Shi, X., Dec-2024, In: Genome Research. 34, 12, p. 2304-2318 15 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile26 Downloads (Pure) -
Antibody signatures against viruses and microbiome reflect past and chronic exposures and associate with aging and inflammation
Andreu-Sánchez, S., Ripoll-Cladellas, A., Culinscaia, A., Bulut, O., Bourgonje, A. R., Netea, M. G., Lansdorp, P., Aubert, G., Bonder, M. J., Franke, L. H., Vogl, T., van der Wijst, M. G. P., Melé, M., van Baarle, D., Fu, J. & Zhernakova, A., 21-Jun-2024, In: iScience . 27, 6, 22 p., 109981.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile422 Downloads (Pure) -
Epigenome-wide association study on the plasma metabolome suggests self-regulation of the glycine and serine pathway through DNA methylation
Wu, J., Palasantzas, V., Andreu-Sánchez, S., Plösch, T., Leonard, S., Li, S., Bonder, M. J., Westra, H.-J., van Meurs, J., Ghanbari, M., Franke, L., Zhernakova, A., Fu, J., Hoogerland, J. A. & Zhernakova, D. V., 13-Aug-2024, In: Clinical Epigenetics. 16, 16 p., 104.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile49 Downloads (Pure) -
Linking the gut microbiome to host DNA methylation by a discovery and replication epigenome-wide association study
Demirkan, A., van Dongen, J., Finnicum, C. T., Westra, H. J., Jankipersadsing, S., Willemsen, G., Ijzerman, R. G., Boomsma, D. I., Ehli, E. A., Bonder, M. J., Fu, J., Franke, L., Wijmenga, C., de Geus, E. J. C., Kurilshikov, A. & Zhernakova, A., Dec-2024, In: BMC Genomics. 25, 11 p., 1224.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile18 Downloads (Pure) -
Phenotype prediction using biologically interpretable neural networks on multi-cohort multi-omics data
Bios Consortium , van Hilten, A., van Rooij, J., Ikram, M. A., Niessen, W. J., van Meurs, J. B. J. & Roshchupkin, G. V., Dec-2024, In: npj Systems Biology and Applications. 10, 10 p., 81.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile3 Citations (Scopus)42 Downloads (Pure)
Datasets
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Additional file 5: of The emerging landscape of dynamic DNA methylation in early childhood
Annesi-Maesano, I. (Contributor), Kull, I. (Contributor), Just, J. (Contributor), Baïz, N. (Contributor), Sunyer, J. (Contributor), Jankipersadsing, S. A. (Contributor), van der Vlies, P. (Contributor), Bonder, M. J. (Contributor), Koppelman, G. H. (Contributor), Bustamante, M. (Contributor), Antó, J. M. (Contributor), Wijmenga, C. (Contributor), Xu, C.-J. (Contributor), Bousquet, J. (Contributor), van Diemen, C. (Contributor), Zhernakova, S. (Contributor), Gehring, U. (Contributor), Li, Y. (Contributor), Rijkom, B. (Contributor), Postma, D. (Contributor), Melén, E. (Contributor), Kere, J. (Contributor) & Söderhäll, C. (Contributor), University of Groningen, 6-Jan-2017
DOI: 10.6084/m9.figshare.c.3659303_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3659303_d5.v1
Dataset
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Additional file 6 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
't Hoen, P. A. C. (Contributor), Verbiest, M. (Contributor), Vermaat, M. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Verkerk, M. (Contributor), Heijmans, B. T. (Contributor), van der Breggen, R. (Contributor), Nooren, I. (Contributor), Isaacs, A. (Contributor), 't Hoen, P.-B. (Contributor), Lakenberg, N. (Contributor), Mei, H. (Contributor), van Dijk, F. (Contributor), Wijmenga, C. (Contributor), Zhernakova, D. (Contributor), van Heemst, D. (Contributor), Boomsma, D. I. (Contributor), Stehouwer, C. D. A. (Contributor), Deelen, J. (Contributor), Bonder, M. J. (Contributor), Hofman, B. A. (Contributor), Schalkwijk, C. G. (Contributor), Bot, J. (Contributor), Zhernakova, S. (Contributor), Kielbasa, S. M. (Contributor), van Duijn, C. M. (Contributor), Franke, L. (Contributor), Uitterlinden, A. G. (Contributor), Beekman, M. (Contributor), Jhamai, P. M. (Contributor), Moed, M. (Contributor), Luijk, R. (Contributor), van Meurs, J. (Contributor), Arindrarto, W. (Contributor), van Zwet, E. W. (Contributor), Jansen, R. (Contributor), Swertz, M. (Contributor), van 't Hof, P. (Contributor), van Rooij, J. (Contributor), van Dongen, J. (Contributor), van den Berg, L. H. (Contributor), Veldink, J. H. (Contributor), Eline Slagboom (Contributor), van Greevenbroek, M. M. J. (Contributor), Deelen, P. (Contributor), Suchiman, H. E. D. (Contributor), van Iterson, M. (Contributor), van der Kallen, C. J. H. (Contributor), Hottenga, J. J. (Contributor), Pool, R. (Contributor) & van Galen, M. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d7.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d7.v1
Dataset
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Additional file 3 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
Hofman, B. A. (Contributor), Arindrarto, W. (Contributor), Mei, H. (Contributor), van der Kallen, C. J. H. (Contributor), Schalkwijk, C. G. (Contributor), van Dongen, J. (Contributor), Eline Slagboom (Contributor), van den Berg, L. H. (Contributor), Luijk, R. (Contributor), Jansen, R. (Contributor), 't Hoen, P. A. C. (Contributor), Lakenberg, N. (Contributor), van Galen, M. (Contributor), Heijmans, B. T. (Contributor), Verbiest, M. (Contributor), Wijmenga, C. (Contributor), Bonder, M. J. (Contributor), Beekman, M. (Contributor), Kielbasa, S. M. (Contributor), van 't Hof, P. (Contributor), van Rooij, J. (Contributor), van Heemst, D. (Contributor), Deelen, P. (Contributor), Uitterlinden, A. G. (Contributor), Pool, R. (Contributor), Vermaat, M. (Contributor), Verkerk, M. (Contributor), van Duijn, C. M. (Contributor), Isaacs, A. (Contributor), Moed, M. (Contributor), van Iterson, M. (Contributor), Stehouwer, C. D. A. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Suchiman, H. E. D. (Contributor), Zhernakova, D. (Contributor), van Greevenbroek, M. M. J. (Contributor), van der Breggen, R. (Contributor), Swertz, M. (Contributor), Veldink, J. H. (Contributor), Boomsma, D. I. (Contributor), Bot, J. (Contributor), van Meurs, J. (Contributor), Jhamai, P. M. (Contributor), Deelen, J. (Contributor), 't Hoen, P.-B. (Contributor), Zhernakova, S. (Contributor), Nooren, I. (Contributor), Hottenga, J. J. (Contributor), Franke, L. (Contributor), van Zwet, E. W. (Contributor) & van Dijk, F. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d4.v1
Dataset
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Additional file 7 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
van Galen, M. (Contributor), Luijk, R. (Contributor), van der Kallen, C. J. H. (Contributor), 't Hoen, P. A. C. (Contributor), van der Breggen, R. (Contributor), van Dongen, J. (Contributor), van Heemst, D. (Contributor), van Iterson, M. (Contributor), van Rooij, J. (Contributor), Lakenberg, N. (Contributor), van 't Hof, P. (Contributor), Verkerk, M. (Contributor), Vermaat, M. (Contributor), Beekman, M. (Contributor), Verbiest, M. (Contributor), Boomsma, D. I. (Contributor), Jhamai, P. M. (Contributor), Bot, J. (Contributor), Suchiman, H. E. D. (Contributor), Franke, L. (Contributor), Heijmans, B. T. (Contributor), Hottenga, J. J. (Contributor), Moed, M. (Contributor), Deelen, J. (Contributor), Deelen, P. (Contributor), Nooren, I. (Contributor), Jansen, R. (Contributor), Swertz, M. (Contributor), 't Hoen, P.-B. (Contributor), Zhernakova, S. (Contributor), van Dijk, F. (Contributor), Pool, R. (Contributor), Hofman, B. A. (Contributor), van den Berg, L. H. (Contributor), Uitterlinden, A. G. (Contributor), Bonder, M. J. (Contributor), Kielbasa, S. M. (Contributor), van Meurs, J. (Contributor), Eline Slagboom (Contributor), Stehouwer, C. D. A. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Zhernakova, D. (Contributor), Schalkwijk, C. G. (Contributor), Mei, H. (Contributor), Arindrarto, W. (Contributor), Wijmenga, C. (Contributor), van Zwet, E. W. (Contributor), van Duijn, C. M. (Contributor), Veldink, J. H. (Contributor), Isaacs, A. (Contributor) & van Greevenbroek, M. M. J. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d5.v1
Dataset
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Additional file 4 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution
van der Breggen, R. (Contributor), Hofman, B. A. (Contributor), Pool, R. (Contributor), Nooren, I. (Contributor), Deelen, P. (Contributor), Vermaat, M. (Contributor), Zhernakova, S. (Contributor), van Zwet, E. W. (Contributor), Heijmans, B. T. (Contributor), Moed, M. (Contributor), van den Berg, L. H. (Contributor), Arindrarto, W. (Contributor), Suchiman, H. E. D. (Contributor), Zhernakova, D. (Contributor), van 't Hof, P. (Contributor), van Dongen, J. (Contributor), Bonder, M. J. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Schalkwijk, C. G. (Contributor), Kielbasa, S. M. (Contributor), van Iterson, M. (Contributor), van der Kallen, C. J. H. (Contributor), van Duijn, C. M. (Contributor), Deelen, J. (Contributor), Veldink, J. H. (Contributor), van Heemst, D. (Contributor), 't Hoen, P.-B. (Contributor), Mei, H. (Contributor), Jhamai, P. M. (Contributor), van Dijk, F. (Contributor), Jansen, R. (Contributor), Eline Slagboom (Contributor), Luijk, R. (Contributor), Wijmenga, C. (Contributor), van Rooij, J. (Contributor), Bot, J. (Contributor), Lakenberg, N. (Contributor), van Galen, M. (Contributor), Isaacs, A. (Contributor), Boomsma, D. I. (Contributor), 't Hoen, P. A. C. (Contributor), van Meurs, J. (Contributor), Verkerk, M. (Contributor), Stehouwer, C. D. A. (Contributor), Beekman, M. (Contributor), Swertz, M. (Contributor), Uitterlinden, A. G. (Contributor), Franke, L. (Contributor), Hottenga, J. J. (Contributor), Verbiest, M. (Contributor) & van Greevenbroek, M. M. J. (Contributor), University of Groningen, 28-Jan-2017
DOI: 10.6084/m9.figshare.c.3676579_d6.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d6.v1
Dataset
Press/Media
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Zeven wetenschappers van RUG en UMCG ontvangen Vidi-beurs
22/10/2024
1 item of Media coverage
Press/Media: Expert Comment › Popular
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Genetic regulation of blood cells: Proximity of a gene to a genetic change plays an important role
Bonder, M. J., Claringbould, A. & Deelen, P.
22/09/2021
1 item of Media coverage
Press/Media: Research › Popular