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Marc Jan Bonder

 https://orcid.org/0000-0002-8431-3180

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Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

  1. SDG 2 - Zero Hunger
    SDG 2 Zero Hunger
  2. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being
  3. SDG 16 - Peace, Justice and Strong Institutions
    SDG 16 Peace, Justice and Strong Institutions

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Collaborations and top research areas from the last five years

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  • A genome-scale single-cell CRISPRi map of trans gene regulation across human pluripotent stem cell lines

    Feng, C., Peets, E. M., Zhou, Y., Crepaldi, L., Usluer, S., Dunham, A., Braunger, J. M., Su, J., Strauss, M. E., Muraro, D., Xian Cheam, K. A., Bonder, M. J., Nogales, E. G., Cooper, S., Bassett, A., Leonard, S., Gu, Y., Fussing, B., Burke, D. & Parts, L. & 2 others, Stegle, O. & Velten, B., 11-Feb-2026, In: Cell Genomics. 6, 2, 23 p., 101076.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    File
    1 Citation (Scopus)
    27 Downloads (Pure)

  • Author Correction: Complex genetic variation in nearly complete human genomes (Nature, (2025), 644, 8076, (430-441), 10.1038/s41586-025-09140-6)

    Logsdon, G. A., Ebert, P., Audano, P. A., Loftus, M., Porubsky, D., Ebler, J., Yilmaz, F., Hallast, P., Prodanov, T., Yoo, D. A., Paisie, C. A., Harvey, W. T., Zhao, X., Martino, G. V., Henglin, M., Munson, K. M., Rabbani, K., Chin, C. S., Gu, B. & Ashraf, H. & 29 others, Scholz, S., Austine-Orimoloye, O., Balachandran, P., Bonder, M. J., Cheng, H., Chong, Z., Crabtree, J., Gerstein, M., Guethlein, L. A., Hasenfeld, P., Hickey, G., Hoekzema, K., Hunt, S. E., Jensen, M., Jiang, Y., Koren, S., Kwon, Y., Li, C., Li, H., Li, J., Norman, P. J., Oshima, K. K., Paten, B., Phillippy, A. M., Pollock, N. R., Rausch, T., Rautiainen, M., Song, Y. & Söylev, A., 18-Sept-2025, In: Nature. 645, 8081, p. E6

    Research output: Contribution to journal › Erratum

    Open Access

  • Complex genetic variation in nearly complete human genomes

    Logsdon, G. A., Ebert, P., Audano, P. A., Loftus, M., Porubsky, D., Ebler, J., Yilmaz, F., Hallast, P., Prodanov, T., Yoo, D. A., Paisie, C. A., Harvey, W. T., Zhao, X., Martino, G. V., Henglin, M., Munson, K. M., Rabbani, K., Chin, C. S., Gu, B. & Ashraf, H. & 48 others, Scholz, S., Austine-Orimoloye, O., Balachandran, P., Bonder, M. J., Cheng, H., Chong, Z., Crabtree, J., Gerstein, M., Guethlein, L. A., Hasenfeld, P., Hickey, G., Hoekzema, K., Hunt, S. E., Jensen, M., Jiang, Y., Koren, S., Kwon, Y., Li, C., Li, H., Li, J., Norman, P. J., Oshima, K. K., Paten, B., Phillippy, A. M., Pollock, N. R., Rausch, T., Rautiainen, M., Song, Y., Söylev, A., Sulovari, A., Surapaneni, L., Tsapalou, V., Zhou, W., Zhou, Y., Zhu, Q., Zody, M. C., Mills, R. E., Devine, S. E., Shi, X., Talkowski, M. E., Chaisson, M. J. P., Dilthey, A. T., Konkel, M. K., Korbel, J. O., Lee, C., Beck, C. R., Eichler, E. E. & Marschall, T., 14-Aug-2025, In: Nature. 644, 8076, p. 430-441 12 p.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    File
    41 Citations (Scopus)
    5 Downloads (Pure)

  • Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats

    Tonnelé, H., Chen, D., Morillo, F., Garcia-Calleja, J., Chitre, A. S., Johnson, B. B., Sanches, T. M., Cheng, R., Bonder, M. J., Gonzalez, A., Kosciolek, T., George, A. M., Han, W., Holl, K., Horvath, A., Ishiwari, K., King, C. P., Lamparelli, A. C., Martin, C. D. & Martinez, A. G. & 16 others, Netzley, A. H., Tripi, J. A., Wang, T., Bosch, E., Doris, P. A., Stegle, O., Chen, H., Flagel, S. B., Meyer, P. J., Richards, J. B., Robinson, T. E., Solberg Woods, L. C., Polesskaya, O., Knight, R., Palmer, A. A. & Baud, A., Dec-2025, In: Nature Communications. 16, 1, 17 p., 10126.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    File
    2 Downloads (Pure)

  • Optimized summary-statistic-based single-cell eQTL meta-analysis

    sc-eQTLGen Consortium, Korshevniuk, M., Westra, H. J., Oelen, R., van der Wijst, M. G. P., Franke, L. & Bonder, M. J., 4-Aug-2025, In: Scientific Reports. 15, 1, 13 p., 28407.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    File
    6 Downloads (Pure)
View all 108 research outputs

  • Additional file 5: of The emerging landscape of dynamic DNA methylation in early childhood

    Annesi-Maesano, I. (Contributor), Kull, I. (Contributor), Just, J. (Contributor), Baïz, N. (Contributor), Sunyer, J. (Contributor), Jankipersadsing, S. A. (Contributor), van der Vlies, P. (Contributor), Bonder, M. J. (Contributor), Koppelman, G. H. (Contributor), Bustamante, M. (Contributor), Antó, J. M. (Contributor), Wijmenga, C. (Contributor), Xu, C.-J. (Contributor), Bousquet, J. (Contributor), van Diemen, C. (Contributor), Zhernakova, S. (Contributor), Gehring, U. (Contributor), Li, Y. (Contributor), Rijkom, B. (Contributor), Postma, D. (Contributor), Melén, E. (Contributor), Kere, J. (Contributor) & Söderhäll, C. (Contributor), University of Groningen, 6-Jan-2017

    DOI: 10.6084/m9.figshare.c.3659303_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3659303_d5.v1

    Dataset

  • Additional file 3 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

    Hofman, B. A. (Contributor), Arindrarto, W. (Contributor), Mei, H. (Contributor), van der Kallen, C. J. H. (Contributor), Schalkwijk, C. G. (Contributor), van Dongen, J. (Contributor), Eline Slagboom (Contributor), van den Berg, L. H. (Contributor), Luijk, R. (Contributor), Jansen, R. (Contributor), 't Hoen, P. A. C. (Contributor), Lakenberg, N. (Contributor), van Galen, M. (Contributor), Heijmans, B. T. (Contributor), Verbiest, M. (Contributor), Wijmenga, C. (Contributor), Bonder, M. J. (Contributor), Beekman, M. (Contributor), Kielbasa, S. M. (Contributor), van 't Hof, P. (Contributor), van Rooij, J. (Contributor), van Heemst, D. (Contributor), Deelen, P. (Contributor), Uitterlinden, A. G. (Contributor), Pool, R. (Contributor), Vermaat, M. (Contributor), Verkerk, M. (Contributor), van Duijn, C. M. (Contributor), Isaacs, A. (Contributor), Moed, M. (Contributor), van Iterson, M. (Contributor), Stehouwer, C. D. A. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Suchiman, H. E. D. (Contributor), Zhernakova, D. (Contributor), van Greevenbroek, M. M. J. (Contributor), van der Breggen, R. (Contributor), Swertz, M. (Contributor), Veldink, J. H. (Contributor), Boomsma, D. I. (Contributor), Bot, J. (Contributor), van Meurs, J. (Contributor), Jhamai, P. M. (Contributor), Deelen, J. (Contributor), 't Hoen, P.-B. (Contributor), Zhernakova, S. (Contributor), Nooren, I. (Contributor), Hottenga, J. J. (Contributor), Franke, L. (Contributor), van Zwet, E. W. (Contributor) & van Dijk, F. (Contributor), University of Groningen, 28-Jan-2017

    DOI: 10.6084/m9.figshare.c.3676579_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d4.v1

    Dataset

  • Additional file 6 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

    't Hoen, P. A. C. (Contributor), Verbiest, M. (Contributor), Vermaat, M. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Verkerk, M. (Contributor), Heijmans, B. T. (Contributor), van der Breggen, R. (Contributor), Nooren, I. (Contributor), Isaacs, A. (Contributor), 't Hoen, P.-B. (Contributor), Lakenberg, N. (Contributor), Mei, H. (Contributor), van Dijk, F. (Contributor), Wijmenga, C. (Contributor), Zhernakova, D. (Contributor), van Heemst, D. (Contributor), Boomsma, D. I. (Contributor), Stehouwer, C. D. A. (Contributor), Deelen, J. (Contributor), Bonder, M. J. (Contributor), Hofman, B. A. (Contributor), Schalkwijk, C. G. (Contributor), Bot, J. (Contributor), Zhernakova, S. (Contributor), Kielbasa, S. M. (Contributor), van Duijn, C. M. (Contributor), Franke, L. (Contributor), Uitterlinden, A. G. (Contributor), Beekman, M. (Contributor), Jhamai, P. M. (Contributor), Moed, M. (Contributor), Luijk, R. (Contributor), van Meurs, J. (Contributor), Arindrarto, W. (Contributor), van Zwet, E. W. (Contributor), Jansen, R. (Contributor), Swertz, M. (Contributor), van 't Hof, P. (Contributor), van Rooij, J. (Contributor), van Dongen, J. (Contributor), van den Berg, L. H. (Contributor), Veldink, J. H. (Contributor), Eline Slagboom (Contributor), van Greevenbroek, M. M. J. (Contributor), Deelen, P. (Contributor), Suchiman, H. E. D. (Contributor), van Iterson, M. (Contributor), van der Kallen, C. J. H. (Contributor), Hottenga, J. J. (Contributor), Pool, R. (Contributor) & van Galen, M. (Contributor), University of Groningen, 28-Jan-2017

    DOI: 10.6084/m9.figshare.c.3676579_d7.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d7.v1

    Dataset

  • Additional file 5 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

    Wijmenga, C. (Contributor), Verbiest, M. (Contributor), Hofman, B. A. (Contributor), Vermaat, M. (Contributor), Nooren, I. (Contributor), Mei, H. (Contributor), Eline Slagboom (Contributor), van Iterson, M. (Contributor), Veldink, J. H. (Contributor), van Galen, M. (Contributor), van 't Hof, P. (Contributor), van Meurs, J. (Contributor), 't Hoen, P.-B. (Contributor), van Heemst, D. (Contributor), Franke, L. (Contributor), Zhernakova, S. (Contributor), Moed, M. (Contributor), Verkerk, M. (Contributor), Pool, R. (Contributor), Beekman, M. (Contributor), van Dijk, F. (Contributor), van den Berg, L. H. (Contributor), Zhernakova, D. (Contributor), Bot, J. (Contributor), Hottenga, J. J. (Contributor), Lakenberg, N. (Contributor), van der Breggen, R. (Contributor), van der Kallen, C. J. H. (Contributor), Bonder, M. J. (Contributor), Deelen, P. (Contributor), Jansen, R. (Contributor), Schalkwijk, C. G. (Contributor), Jhamai, P. M. (Contributor), Swertz, M. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Isaacs, A. (Contributor), Kielbasa, S. M. (Contributor), Luijk, R. (Contributor), Uitterlinden, A. G. (Contributor), van Dongen, J. (Contributor), van Greevenbroek, M. M. J. (Contributor), Arindrarto, W. (Contributor), van Rooij, J. (Contributor), Heijmans, B. T. (Contributor), Stehouwer, C. D. A. (Contributor), van Zwet, E. W. (Contributor), 't Hoen, P. A. C. (Contributor), Suchiman, H. E. D. (Contributor), Deelen, J. (Contributor), van Duijn, C. M. (Contributor) & Boomsma, D. I. (Contributor), University of Groningen, 28-Jan-2017

    DOI: 10.6084/m9.figshare.c.3676579_d1.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d1.v1

    Dataset

  • Additional file 7 of Controlling bias and inflation in epigenome- and transcriptome-wide association studies using the empirical null distribution

    van Galen, M. (Contributor), Luijk, R. (Contributor), van der Kallen, C. J. H. (Contributor), 't Hoen, P. A. C. (Contributor), van der Breggen, R. (Contributor), van Dongen, J. (Contributor), van Heemst, D. (Contributor), van Iterson, M. (Contributor), van Rooij, J. (Contributor), Lakenberg, N. (Contributor), van 't Hof, P. (Contributor), Verkerk, M. (Contributor), Vermaat, M. (Contributor), Beekman, M. (Contributor), Verbiest, M. (Contributor), Boomsma, D. I. (Contributor), Jhamai, P. M. (Contributor), Bot, J. (Contributor), Suchiman, H. E. D. (Contributor), Franke, L. (Contributor), Heijmans, B. T. (Contributor), Hottenga, J. J. (Contributor), Moed, M. (Contributor), Deelen, J. (Contributor), Deelen, P. (Contributor), Nooren, I. (Contributor), Jansen, R. (Contributor), Swertz, M. (Contributor), 't Hoen, P.-B. (Contributor), Zhernakova, S. (Contributor), van Dijk, F. (Contributor), Pool, R. (Contributor), Hofman, B. A. (Contributor), van den Berg, L. H. (Contributor), Uitterlinden, A. G. (Contributor), Bonder, M. J. (Contributor), Kielbasa, S. M. (Contributor), van Meurs, J. (Contributor), Eline Slagboom (Contributor), Stehouwer, C. D. A. (Contributor), Tigchelaar - Feenstra, E. (Contributor), Zhernakova, D. (Contributor), Schalkwijk, C. G. (Contributor), Mei, H. (Contributor), Arindrarto, W. (Contributor), Wijmenga, C. (Contributor), van Zwet, E. W. (Contributor), van Duijn, C. M. (Contributor), Veldink, J. H. (Contributor), Isaacs, A. (Contributor) & van Greevenbroek, M. M. J. (Contributor), University of Groningen, 28-Jan-2017

    DOI: 10.6084/m9.figshare.c.3676579_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3676579_d5.v1

    Dataset

View all 40 datasets